Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32083
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    27   5.7  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    27   5.7  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   5.7  
At5g22070.1 68418.m02570 expressed protein contains Pfam profile...    27   9.9  

>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 136 PAPMELTTTISRLPTASCVAKL 201
           P  M+LT  + +LPTASC  K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 156  NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 308
            +++ +T NG      SET E+ + L D   KP      RG+Y    TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 180 GIVRSETGELKEALDDDNKP 239
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At5g22070.1 68418.m02570 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 362

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +3

Query: 6   TSRXRTKTIKNEIDHRCSSRPCGYRHRCPPTEDY-PKIVRSEFDASPDGAYNYNFETSN 179
           T R    TIK+ I  R    PC     C P E Y P ++  +    PDG   Y     N
Sbjct: 248 TRRHALLTIKDRILWRKFKLPCYRSDECYPEEHYFPTLLNMK---DPDGCTGYTLTRVN 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,863,054
Number of Sequences: 28952
Number of extensions: 176359
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)