Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32081
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    30   0.44 
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ...    26   7.2  
At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2) ...    26   7.2  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    26   7.2  

>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -1

Query: 203 RSRSKIPIPYQACRKELRSKNTIPAYLYTELHLFH*ISRK 84
           R + K+ + +++ +  +R K+ +P +L T+ HLFH  SRK
Sbjct: 23  RLKQKLKLAWKSIK--IRVKSHLPGFLSTKKHLFHIKSRK 60


>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
           identical to WIP2 protein [Arabidopsis thaliana]
           gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 383

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 252 FSTDFFLRFYYHIFFSSVAQQNPYPLPSLP*GTSF 148
           F TD+F    +H + +S    +P+PLP +   +SF
Sbjct: 8   FFTDWFKSNPFHHYPNSSTNPSPHPLPPVTPPSSF 42


>At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2)
           nearly identical to receptor-like serine/threonine
           kinase GI:2465925 from [Arabidopsis thaliana];  intron 3
           was added to circumvent a frameshift.  Either a
           sequencing error exists or this may be a pseudogene.
          Length = 600

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 282 RACARLIXRFFSTDFFLRFYYHIFFSSVAQQNP 184
           RAC     R F T  +L++  H FF   A+  P
Sbjct: 214 RACDGHEARAFFTGCYLKYSTHKFFDDAAEHKP 246


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 299 LVXATVAPAHVSFXGFFPR-IFSYGFTITFFSVRSRSK 189
           L+  T  P++ S+ G FPR +  +GF    F   SR++
Sbjct: 4   LLLGTTIPSYFSWLGLFPRFLVWFGFLKASFFCSSRNQ 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,496,644
Number of Sequences: 28952
Number of extensions: 115474
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)