Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31485
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10740.1 68414.m01225 expressed protein                             30   1.4  
At1g23330.1 68414.m02917 expressed protein                             28   4.2  

>At1g10740.1 68414.m01225 expressed protein
          Length = 473

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 114 YFKLTEADHFLVIVNNNDA-IQFNCI 188
           Y+K+ EADH + IVN   A +QF+ I
Sbjct: 407 YYKIVEADHIMFIVNRERAGVQFDLI 432


>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 114 YFKLTEADHFLVIVNNNDA-IQFNCI 188
           Y+K+ EADH + I+N   A ++F+ I
Sbjct: 412 YYKIVEADHIMFIINRERAGVEFDLI 437


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,797,243
Number of Sequences: 28952
Number of extensions: 185040
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)