Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31484
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.58 
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   1.8  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   2.3  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   3.1  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   7.2  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 90  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 200
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 446 NVCGCDHLAGNVCGCDWHGNGRL 378
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 18  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 134
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 449 GNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAL 318
           GN CG   L GN CG   +GN       GN +G+   +  V  L
Sbjct: 240 GNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAVHEL 282


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -1

Query: 440 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 360
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 122 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 12
           E+R+ R NS V    +L+   G+R C+R     + T+
Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,343
Number of Sequences: 59808
Number of extensions: 205442
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)