Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31482
(340 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 1.4
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 1.4
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 1.4
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 1.4
At1g10570.2 68414.m01191 Ulp1 protease family protein contains P... 28 1.4
At1g10570.1 68414.m01190 Ulp1 protease family protein contains P... 28 1.4
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 4.2
At2g14520.1 68415.m01625 CBS domain-containing protein contains ... 26 5.6
At4g33700.1 68417.m04786 CBS domain-containing protein contains ... 26 7.4
At3g52310.1 68416.m05749 ABC transporter family protein contains... 26 7.4
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 340 SSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 215
SSV G SGI+LVV ++ + + Y F ++A+C +
Sbjct: 808 SSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 340 SSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 215
SSV G SGI+LVV ++ + + Y F ++A+C +
Sbjct: 808 SSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 340 SSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 215
SSV G SGI+LVV ++ + + Y F ++A+C +
Sbjct: 808 SSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 340 SSVNKGA*FRSGISLVVR*VIKCIDRWRYYSFGFNNAICCFV 215
SSV G SGI+LVV ++ + + Y F ++A+C +
Sbjct: 808 SSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMI 849
>At1g10570.2 68414.m01191 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to EST gb|N96456
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -3
Query: 203 DGRSARRLALT-LPCLHTGQTPTARPA*HFINYYVILIQPNKGTKNI*A---FFFSIFFY 36
DGR +++L L CL G+ T+ P IN+Y+ +Q + + + A FF+ FFY
Sbjct: 325 DGRDLVQVSLKDLKCLSPGEYLTS-PV---INFYIRYVQHHVFSADKTAANCHFFNTFFY 380
Query: 35 CKATGTIDY 9
K T + Y
Sbjct: 381 KKLTEAVSY 389
>At1g10570.1 68414.m01190 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to EST gb|N96456
Length = 571
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -3
Query: 203 DGRSARRLALT-LPCLHTGQTPTARPA*HFINYYVILIQPNKGTKNI*A---FFFSIFFY 36
DGR +++L L CL G+ T+ P IN+Y+ +Q + + + A FF+ FFY
Sbjct: 326 DGRDLVQVSLKDLKCLSPGEYLTS-PV---INFYIRYVQHHVFSADKTAANCHFFNTFFY 381
Query: 35 CKATGTIDY 9
K T + Y
Sbjct: 382 KKLTEAVSY 390
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 204 GRALGATARPNVAVSPHWPNADRSSRL 124
G A + RPN SP PN+ RS RL
Sbjct: 512 GHANVSNDRPNACSSPQTPNSLRSERL 538
>At2g14520.1 68415.m01625 CBS domain-containing protein contains
Pfam profiles PF00571: CBS domain, PF01595: Domain of
unknown function
Length = 423
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 252 ILSGSITPSVVLCSE*GRALGATARPNVAV 163
+L G I P V CS G A+GAT P V V
Sbjct: 109 LLFGEIIPQSV-CSRHGLAIGATVAPFVRV 137
>At4g33700.1 68417.m04786 CBS domain-containing protein contains
Pfam profiles PF00571: CBS domain, PF01595: Domain of
unknown function
Length = 424
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 252 ILSGSITPSVVLCSE*GRALGATARPNVAV 163
+L G I P + CS G A+GAT P V V
Sbjct: 109 LLFGEIIPQSI-CSRYGLAIGATVAPFVRV 137
>At3g52310.1 68416.m05749 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 737
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 140 SAFGQCGDTATLGRAVAPSARPYSEH-KTTDGVIEPERIVAPSINTFNHLT 289
+A G + +G +V+ + +PYS+H KT G + + ++ P + LT
Sbjct: 196 NALGGRFNQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHLTVKETLT 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,818,994
Number of Sequences: 28952
Number of extensions: 119602
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -