Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31480
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)                      30   1.7  
SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)                30   2.2  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   3.0  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           29   3.9  
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   29   3.9  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 29   3.9  
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   29   5.2  
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)                    29   5.2  
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 29   5.2  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   28   6.8  
SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6235| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 6   RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFV 185
           R+    RA QE   P    E     A      P    P P  KP  + +AKP+ KQ T  
Sbjct: 116 RESEFTRAKQEAPQPIKPAEKPPKPAAAKEPVPVKPEPKPETKPEAKQEAKPEAKQVTKP 175

Query: 186 NSLHEEHIQQSNSFKR 233
           + + +E   ++ +  +
Sbjct: 176 SPIVQEEAPRTQAIPK 191


>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
          Length = 244

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +2

Query: 95  HSADQQEASAYTETDEAVRRETERKTNDLRKFTTRRTHSTVEFIQTPHVQCTWGHRILKM 274
           H  D Q A  YT+    +  +    +   R +T     S    I T HV  +   RI   
Sbjct: 100 HVIDSQTARIYTQHTARIYIQHVNDSQTARIYTNHMNDSQTARIYTQHVNDSKTARIYTQ 159

Query: 275 RRVTSFSALT-TARCS*LCGNNTINHH 352
               S +A T T R S  CG  T + H
Sbjct: 160 HVSDSQTARTFTQRASTTCGRLTDSAH 186


>SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
          Length = 529

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 121 RLHR--NRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMYLGTPNSKDATRDLLQ 294
           RLH   + R   T +   N+ P    +   T +S++H    C  +   PNS D +R    
Sbjct: 173 RLHSTPDSRLHSTPDSWLNRTPD--SWLHRTTDSKLHRTPDCRSHRTPPNSPDVSRQSSI 230

Query: 295 RTNDC 309
           R  DC
Sbjct: 231 RVRDC 235


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 113 EASAYTETDEAVRRETERKTNDLRKFTTRRTHSTVEFIQTPHV 241
           E S+Y   DEA +R  ++  +  +KF++  + ST  F    H+
Sbjct: 158 ERSSYLHDDEARKRAIQQLLDSTKKFSSNASRSTTSFSSKYHL 200


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 69  SAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQT 176
           + P AT   T PT+  P  T  PTK +   P G  T
Sbjct: 95  TTPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTT 130


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 48  PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 167
           PDA T    P   K   APT   P   P PT    +KP G
Sbjct: 221 PDAPTP---PPPVKTTAAPTPSPPQTPPPPTGSCGSKPSG 257


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 6    RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
            RQVR  RAL       AAT+  AP+  + +T P + +   +P P +Q     K
Sbjct: 1102 RQVR--RALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSEK 1152


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 6    RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
            RQVR  RAL       AAT+  AP+  + +T P + +   +P P +Q     K
Sbjct: 1100 RQVR--RALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSVSDK 1150


>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +3

Query: 42  GLPDAATELSAPVATKVFTAPT-SKRPAPTPKPTKQSDAKPKGKQTTFVNSLHE---EHI 209
           G+    +     +    +T P  S  P P   P ++   KP+G +T F+  L E   EHI
Sbjct: 307 GMDTQGSSQQGTLPITAYTRPNCSLEPPPPDMPMQKQKEKPEGCRTVFIGGLPESINEHI 366


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 99  APTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNSFKRLMF 242
           AP +K+P  T   T     +PK K  T V   HEE   +  +  R MF
Sbjct: 268 APKAKKPLLTLPSTPNVLKRPKMKPKTHVEKTHEEQELEEINKMREMF 315


>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
          Length = 334

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 72  APVATKVFTAPTSKRPAPTPKPTKQSDA 155
           A  +T    +PTS+ P P P+P K+SD+
Sbjct: 191 ATPSTPSTPSPTSETPRPRPQPPKRSDS 218


>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 1380

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 6    RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
            RQVR  RAL       AAT+  AP+  + +T P + +   +P P +Q     K
Sbjct: 1140 RQVR--RALGSPQPTYAATQYRAPILPERYTIPEAIQSQSSPLPVQQPSVSEK 1190


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 6    RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
            RQVR  RAL       AAT+  AP+  + +T P + +   +P P +Q     K
Sbjct: 921  RQVR--RALGSPQPTYAATQYRAPILPERYTIPEAIQSQSSPLPVQQPSVSDK 971


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +3

Query: 30   LQEDGLPDAATEL----SAPVATKVFTA---PTSKRPAPTPKPTKQSD 152
            ++ED L    TE+    + P  TK+ T    P+ + PAP PKP   S+
Sbjct: 4609 IEEDELDAEPTEVEPAPAEPTPTKIQTEVSKPSKREPAPAPKPVFASE 4656


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 TSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHI 209
           T+ RP PT +P  Q+ ++P+G Q   V   HE  +
Sbjct: 466 TTVRPQPTDRPRPQTTSRPQGTQCGAV-KCHERGV 499


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 6   RQVRTYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK 164
           RQVR  RAL       AAT+  AP+  + +T P + +   +P P +Q     K
Sbjct: 249 RQVR--RALGSPQPTYAATQYRAPILPERYTTPEAIQIQSSPLPVQQPSVSDK 299


>SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 63  ELSAPVATKVFTAPTS--KRPAPTPKPTKQSDAKPKGKQTT 179
           EL  PVA      PT+  +   P+P+P K S  K   KQ T
Sbjct: 142 ELPPPVAISAAAVPTAAPQEATPSPEPPKLSVLKESPKQDT 182


>SB_6235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 131 ETDEAVRRETERKTNDLRKFTTRRT-HSTVEFIQTPH 238
           ++D+    E +  T DLR+ TTRRT +S     Q PH
Sbjct: 126 DSDDDEEEEEDDVTYDLRQVTTRRTPYSRCPCSQEPH 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,337
Number of Sequences: 59808
Number of extensions: 332754
Number of successful extensions: 1237
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)