Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31480
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi...    32   0.45 
At5g38560.1 68418.m04662 protein kinase family protein contains ...    30   1.4  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   3.2  
At4g26760.1 68417.m03855 microtubule associated protein (MAP65/A...    29   4.2  
At3g18990.1 68416.m02410 transcriptional factor B3 family protei...    28   5.6  
At1g06760.1 68414.m00718 histone H1, putative similar to histone...    28   5.6  
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta...    28   7.4  
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t...    28   7.4  
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ...    28   7.4  
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ...    28   7.4  
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    27   9.8  

>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota]
          Length = 368

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 54  AATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQ 215
           ++T L+AP  T+    P S       +PT QSD   +   T    S  E+ +QQ
Sbjct: 99  SSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQ 152


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 48  PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQTT 179
           PDA+    AP  T     P+   P  TP P  ++ + PK   +T
Sbjct: 119 PDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPST 162


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 45  LPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKP 161
           LP ++T L AP        P SK PAP P P  ++   P
Sbjct: 704 LPPSSTRLGAPPPPP--PPPLSKTPAPPPPPLSKTPVPP 740


>At4g26760.1 68417.m03855 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 578

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 131 ETDEAVRR--ETERKTNDLRKFTTRRTHSTVEFIQTPHVQC 247
           ETD +++R  + +RK  +L+K  + R    +EF+ T H  C
Sbjct: 152 ETDLSLKRLDDFQRKLQELQKEKSDRLQKVLEFVSTVHDLC 192


>At3g18990.1 68416.m02410 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 341

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 30  LQEDGLPDAATELSAPVATKVFTAPT-SKRPAPTPKPTKQSDAKPKGKQTTFVNS 191
           L E  +P      S+ + T +FT P  ++ P PTPK  K+   K K      +NS
Sbjct: 144 LPESTVPANKGYASSAIQT-LFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINS 197


>At1g06760.1 68414.m00718 histone H1, putative similar to histone
           H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
           identical to cDNA H1-1C mRNA for histone H1-1 (partial)
           GI:732560
          Length = 274

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 45  LPDAATELSAPVATKVFTAPTSKRPA--PTPKPTKQSDAKPKGKQTTFV 185
           LP A+ + S+P A    +AP  K+PA     K  ++  A  K K+T  V
Sbjct: 128 LPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAV 176


>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains Pfam profile PF00194: Eukaryotic-type carbonic
           anhydrase
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 75  PVATKVFTAPTSKRPAPTPKPTKQSDAKPKGKQT 176
           P   K   APT  +P PTP PT     KPK   T
Sbjct: 28  PPKPKPAPAPTPPKPKPTPAPTPPK-PKPKPAPT 60


>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02847: MA3 domain
          Length = 263

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 108 SKRPAPTPKPTKQSDAKPK 164
           S++P P P PT+Q+  KPK
Sbjct: 65  SQQPKPVPSPTRQTVEKPK 83


>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 720

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 146 VRRETERKTNDLRKFTTRRTHSTVEFIQTPHVQCTWGHRILKMRRVTSFSAL 301
           +R   E K  D R        +T +F++TP  +  WG+R++ +  V + + L
Sbjct: 407 LRESQEWKRMDGRDHFMVAGRTTWDFMRTPENESDWGNRLMILPEVRNMTML 458


>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
           significant) WD-40 repeats (PF0400); identical to WD-40
           repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 507

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 48  PDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPK--GKQTTFVNSLHEEHIQ 212
           P   T  S P   K    P +K  + TP   +QSD K K  GK+T    S+ E++ Q
Sbjct: 16  PSGGTGASGP--KKRGRKPKTKEDSQTPSSQQQSDVKMKESGKKTQQSPSVDEKYSQ 70


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 3   PRQVRTYRALQEDGLPDAATELSAPVAT-KVFTAPTSKRP---APTPKPTKQSDAKPKGK 170
           P+   T      DG  +++ ++   V+   +FT PTS  P    P P+PT+    K K  
Sbjct: 332 PQNTSTPPPTNSDGSFESSDDVWLTVSEIPLFTQPTSAPPPTRPPPPRPTR--PIKKKVN 389

Query: 171 QTTFVNSLHEEHIQQS 218
           + +   S +  H+  S
Sbjct: 390 EPSIPTSAYHSHVPSS 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,761
Number of Sequences: 28952
Number of extensions: 218066
Number of successful extensions: 854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)