Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31477
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18810.1 68416.m02389 protein kinase family protein contains ... 35 0.050
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 4.3
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 28 4.3
At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family... 28 5.7
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 27 7.5
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 27 10.0
At2g21230.2 68415.m02521 bZIP family transcription factor contai... 27 10.0
At2g21230.1 68415.m02520 bZIP family transcription factor contai... 27 10.0
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 10.0
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 10.0
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 10.0
At1g55610.1 68414.m06365 protein kinase family protein contains ... 27 10.0
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 34.7 bits (76), Expect = 0.050
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTSRNWPDTSS 611
PE P P+ T P+P++ ++ S S S PS A PPPD +S+ S P + S
Sbjct: 7 PENSP--PSPTPPSPSSSDNQQQSSPPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDS 61
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 417 SKSSYRPW-PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPPPDKTSHTS 587
S S P+ P PK + P P+ P +S + P+ + PPP + H+S
Sbjct: 109 SPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSS 166
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRAD------PPPDKTSHTSRNWPD 602
P+ P A P P + P ++S KP AD PPP S +S ++P+
Sbjct: 104 PQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLADSPSPPPPPPQPESPSSPSYPE 163
Query: 603 TSSI 614
+ +
Sbjct: 164 PAPV 167
>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
protein contains Pfam profile PF04000: Sas10/Utp3
family; contains Prosite PS00761: Signal peptidases I
signature 3; weak similarity to PEBP2 beta-binding
protein / charged amino acid rich leucine zipper
factor-1 (GI:12061569) [Mus musculus]
Length = 654
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 419 QIELQTLAGGSAEAADGYGASAGNASAPEDEID 517
+ EL+ LAG ++++G G + A A +DE D
Sbjct: 497 KFELRVLAGAGVKSSEGDGRNKNGAFASDDEDD 529
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 85 SRFLSGTVPGRLTDRTGLAIPGIVA 159
S L+G +PG L + GL +PG V+
Sbjct: 556 SNNLTGNLPGELASQAGLVMPGSVS 580
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 27.1 bits (57), Expect = 10.0
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +2
Query: 368 EVNCTEEEMMLFAALQLQIELQTLAGGSAEAADGYGASAGNASAPEDEIDAALCELQAQL 547
EVNC + + ++L+L+I+ + A S + +G AS AS E EID CE+
Sbjct: 474 EVNCLK---VASSSLRLEIDKEKSALDSLKQREGM-ASVTVASL-EAEIDITRCEIALVK 528
Query: 548 EGGPPARQDITHVPE 592
R+++ +P+
Sbjct: 529 SKEKETREEMVELPK 543
>At2g21230.2 68415.m02521 bZIP family transcription factor contains
a bZIP transcription factor basic domain signature
(PDOC00036)
Length = 460
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSAS 533
P +P + ++ PATLQPR +RSM + +S
Sbjct: 54 PPPIPPISPYSQ-IPATLQPRHSRSMSQPSS 83
>At2g21230.1 68415.m02520 bZIP family transcription factor contains
a bZIP transcription factor basic domain signature
(PDOC00036)
Length = 519
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSAS 533
P +P + ++ PATLQPR +RSM + +S
Sbjct: 54 PPPIPPISPYSQ-IPATLQPRHSRSMSQPSS 83
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPP 563
P A P PT T P PA P + + S P A PP
Sbjct: 27 PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPP 67
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPP 563
P A P PT T P PA P + + S P A PP
Sbjct: 27 PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPP 67
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 441 PEAVPKLPTATEPAPATLQPRKTRSMLRSASCKPSWRADPP 563
P A P T T P P T P T + + + P A PP
Sbjct: 27 PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPP 67
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 85 SRFLSGTVPGRLTDRTGLAIPGIVA 159
S L+G +PG L + GL +PG V+
Sbjct: 556 SNNLTGDLPGELASQAGLVMPGSVS 580
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,320
Number of Sequences: 28952
Number of extensions: 228705
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -