Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31476
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    30   1.4  

>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
 Frame = +3

Query: 9   ILLQFYVTI*KDIYKMHSDHEENYKFAACTFFAKSHPGETCGSNGLPL---TPSSIS--- 170
           +L+Q+ +     IY  H DHE+  K    +  +K   GE    N L        SIS   
Sbjct: 454 VLVQYKIMRETLIYLSHLDHEDTEK-QMLSKLSKQLSGEEWAWNNLNTLCWAIGSISGSM 512

Query: 171 ILGRAQRLLSIEHPNLCTYLDIIRGKHGKVVVSQN 275
           ++ +  R L +   +L +  ++++GK  K V++ N
Sbjct: 513 VVEQENRFLVMVIRDLLSLCEVVKGKDNKAVIASN 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,856
Number of Sequences: 28952
Number of extensions: 240356
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)