Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31475
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)                138   4e-33
SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)                125   3e-29
SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14
SB_39655| Best HMM Match : NUDIX (HMM E-Value=1e-22)                   42   3e-04
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   36   0.029
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)             30   1.4  
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_44012| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    28   7.7  

>SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)
          Length = 454

 Score =  138 bits (334), Expect = 4e-33
 Identities = 63/109 (57%), Positives = 84/109 (77%)
 Frame = +3

Query: 330 LGGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETG 509
           LG ++ Y+VA VII E  ++LMM+EAKESC GKWYLPAGR+EK E++VQ A REV+EETG
Sbjct: 177 LGRHICYIVAAVIIREDGKILMMREAKESCLGKWYLPAGRLEKNESLVQGAKREVIEETG 236

Query: 510 LQCDLKTLLVVETAGGSWYRFVLTGEIIGGELKTPARADKESLQAKWIS 656
           L+ +  T++ ++T  G+W R   TG+IIGG+LKT  + DKESL+A W S
Sbjct: 237 LEFEPSTMICIDTVFGNWIRVTFTGKIIGGKLKT--KPDKESLEAAWFS 283


>SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)
          Length = 416

 Score =  125 bits (302), Expect = 3e-29
 Identities = 55/94 (58%), Positives = 74/94 (78%)
 Frame = +3

Query: 330 LGGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETG 509
           LG ++ Y+VA VII E  ++LMM+EAKESC GKWYLPAGR+EK E++VQ A REV+EETG
Sbjct: 303 LGRHICYIVAAVIIREDGKILMMREAKESCLGKWYLPAGRLEKNESLVQGAKREVIEETG 362

Query: 510 LQCDLKTLLVVETAGGSWYRFVLTGEIIGGELKT 611
           L+ +  T++ ++T  G+W R   TG+IIGG+LKT
Sbjct: 363 LEFEPSTMICIDTVFGNWIRVTFTGKIIGGKLKT 396


>SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/49 (65%), Positives = 41/49 (83%)
 Frame = +3

Query: 330 LGGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQ 476
           LG ++ Y+VA VII E  ++LMM+EAKESC GKWYLPAGR+EK E++VQ
Sbjct: 188 LGRHICYIVAAVIIREDGKILMMREAKESCLGKWYLPAGRLEKNESLVQ 236


>SB_39655| Best HMM Match : NUDIX (HMM E-Value=1e-22)
          Length = 322

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
 Frame = +3

Query: 354 VACVIINEF-NEVLMMQEAKESCAGK-----WYLPAGRMEKGETIVQAAVREVLEETGLQ 515
           VA +++NE  N+VL++Q+ ++   G      W  P G  ++GE I   A REV EETG++
Sbjct: 136 VAGIVVNEEENKVLVVQDRQKYKMGVLKKPIWKFPGGLSDEGEDIGHTAEREVFEETGIK 195

Query: 516 CDLKTLLV 539
            + +++++
Sbjct: 196 SEFQSIVL 203


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +3

Query: 345 TYV-VACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCD 521
           TY+ VA  ++ +  ++L+++E   +    W LP G  +  E I + A REVLEETG++ +
Sbjct: 48  TYIGVAGFVVRDDGQLLVVKERFRT-QDHWKLPGGMADYNEDIRETARREVLEETGIEAE 106

Query: 522 LKTLLVV 542
             +L+ +
Sbjct: 107 FVSLVCI 113


>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 384 EVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEE 503
           EVL++  +K     KW +PAG +E GE   + A+REV EE
Sbjct: 115 EVLLVSSSKHP--DKWVVPAGGIEPGEEPKETAIREVQEE 152


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 384 EVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEE 503
           EVL++  +K     KW +PAG +E GE   + A+REV EE
Sbjct: 80  EVLLVSSSKHP--DKWVVPAGGIEPGEEPKETAIREVQEE 117


>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
          Length = 311

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
 Frame = +2

Query: 410 RKLRWEMVFTCWQNG------KRRNNCTGCR 484
           R +R +MV+TC  NG      KRRN C  CR
Sbjct: 61  RSVRRDMVYTCKGNGGCTVDKKRRNQCQACR 91


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 VLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEE 503
           VL     + S   +W +P G ME G+TI +   +E  EE
Sbjct: 549 VLEFVAIQRSDTKEWAIPGGMMEVGDTISKTLKKEFFEE 587


>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 628  LSALAGVFNSPPIISPVS 575
            LS LAG+FN P I+SPV+
Sbjct: 963  LSVLAGMFNPPGIVSPVT 980


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/92 (23%), Positives = 37/92 (40%)
 Frame = -1

Query: 601 SPPIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAGKYHFP 422
           +PPI S   T+  Q PP  +T S  L +    +++  SLT   T+++    L        
Sbjct: 682 TPPIASTTDTSTSQTPPIATTPS--LTTQTTLIATTPSLTTQTTLIATTPSLTTQTTLIA 739

Query: 421 AQLSFASCIISTSLNSFIITQATT*VTLPPST 326
              S  +     +    + TQ T   T P ++
Sbjct: 740 TTPSLTTQTTLIATTPSLTTQTTLIATTPEAS 771


>SB_44012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 462 ETIVQAAVREVLEETGLQCDLKTLLVV 542
           E I + A REVLEETG++ +  +L+ +
Sbjct: 2   EDIRETARREVLEETGIEAEFVSLVCI 28


>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 505 VSSNTSLTAACTIVSPFSILPAGKYHFP 422
           VS NT LT A  I++    LP GKYH P
Sbjct: 781 VSKNT-LTKALKILTEAEGLPDGKYHIP 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,155
Number of Sequences: 59808
Number of extensions: 359684
Number of successful extensions: 922
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)