Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31475
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47240.1 68418.m05825 MutT/nudix family protein similar to SP... 48 5e-06
At2g42070.1 68415.m05202 MutT/nudix family protein similar to SP... 45 4e-05
At2g04430.1 68415.m00447 MutT/nudix family protein similar to SP... 45 5e-05
At2g04450.1 68415.m00449 MutT/nudix family protein similar to SP... 44 7e-05
At5g47650.1 68418.m05883 MutT/nudix family protein similar to Nu... 44 9e-05
At1g68760.1 68414.m07860 MutT/nudix family protein similar to SP... 44 1e-04
At4g12720.3 68417.m01998 MutT/nudix family protein similar to SP... 42 3e-04
At4g12720.2 68417.m01997 MutT/nudix family protein similar to SP... 42 3e-04
At4g12720.1 68417.m01996 MutT/nudix family protein similar to SP... 42 3e-04
At4g25434.1 68417.m03661 MutT/nudix family protein similar to SP... 39 0.003
At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphat... 37 0.010
At5g20070.1 68418.m02390 MutT/nudix family protein low similarit... 35 0.041
At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR... 34 0.072
At2g24310.1 68415.m02906 expressed protein 33 0.13
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 33 0.22
At1g73540.1 68414.m08512 MutT/nudix family protein low similarit... 31 0.67
At1g12880.1 68414.m01496 MutT/nudix family protein similar to di... 31 0.67
At3g12600.1 68416.m01569 MutT/nudix family protein contains Pfam... 30 1.2
At3g26690.2 68416.m03338 MutT/nudix family protein similar to SP... 30 1.6
At3g26690.1 68416.m03337 MutT/nudix family protein similar to SP... 30 1.6
At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphat... 30 1.6
At1g18300.1 68414.m02286 MutT/nudix family protein similar to SP... 29 2.7
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 28 6.3
At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)... 28 6.3
At5g24740.1 68418.m02920 expressed protein 27 8.3
At3g24560.3 68416.m03086 expressed protein contains Pfam profil... 27 8.3
At3g24560.2 68416.m03084 expressed protein contains Pfam profil... 27 8.3
At3g24560.1 68416.m03085 expressed protein contains Pfam profil... 27 8.3
>At5g47240.1 68418.m05825 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 369
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +3
Query: 294 ITPTTPSNFKPVLGGNVTYVVAC--VIINEFNEVLMMQE--AKESCAGKWYLPAGRMEKG 461
+T P +L N ++ V ++N+ EVL++QE S G W LP G + +
Sbjct: 171 LTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINES 230
Query: 462 ETIVQAAVREVLEETGLQCDLKTLLVVETA 551
E I AVREV EETG+ + ++ A
Sbjct: 231 EEIFSGAVREVKEETGVDTEFSEVIAFRHA 260
>At2g42070.1 68415.m05202 MutT/nudix family protein similar to
SP|Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13)
{Methanococcus jannaschii}; contains Pfam profile
PF00293: NUDIX domain
Length = 280
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 339 NVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETG 509
N VV C+I +E +VL+ + + G W LPAG +E GE+ Q A+RE EE G
Sbjct: 120 NPKMVVGCLIEHE-GKVLLCKRNIQPSHGLWTLPAGYLEVGESAAQGAMRETWEEAG 175
>At2g04430.1 68415.m00447 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 283
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Frame = +3
Query: 354 VACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGETIVQAAVREVLEETGLQCD-L 524
+ ++N+ E+L++QE K W +P G +++GE+I AVREV EET + + +
Sbjct: 108 IGAFVLNKNGEMLVVQENSGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFV 167
Query: 525 KTLLVVETAGGSWYRFVLTGEIIGGELKT--PARADKESLQAKWI 653
+ L +E+ W R + E +T + D E AKW+
Sbjct: 168 EVLSFMESHQAVWQRKTDIFFVCELEARTFEIQKQDSEIHAAKWM 212
>At2g04450.1 68415.m00449 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 283
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Frame = +3
Query: 294 ITPTTPSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGET 467
+ T P+N +G V A V+ + EVL++QE G W LP G +++GE
Sbjct: 92 VPSTLPANASHRIG-----VGAFVLNKKTKEVLVVQEIDGHFKGTGVWKLPTGVVKEGEN 146
Query: 468 IVQAAVREVLEETGLQCDLKTLLVVETAGGSWYRFVLTGEIIGGELKTPA----RADKES 635
I + A+REV EETG++ +L + ++ + T EL+ + D E
Sbjct: 147 IWEGALREVEEETGIKTKFVEVLAFRESHQAFLE-IKTDIFFLCELEPTTFEIKKQDSEI 205
Query: 636 LQAKWI 653
L AKW+
Sbjct: 206 LAAKWM 211
>At5g47650.1 68418.m05883 MutT/nudix family protein similar to
Nucleoside diphosphate-linked moiety X motif 6 (Protein
GFG) from {Xenopus laevis} SP|P13420, {Homo sapiens}
SP|P53370; contains Pfam profile PF00293: NUDIX domain
Length = 278
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 VACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGETIVQAAVREVLEETGLQCDLK 527
+ +IN EVL++QE G+ W P G + +GE I +VREV EETG+ +
Sbjct: 115 IGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFD 174
Query: 528 TLL 536
+L
Sbjct: 175 QIL 177
>At1g68760.1 68414.m07860 MutT/nudix family protein similar to
SP|Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13)
{Methanococcus jannaschii}; contains Pfam profile
PF00293: NUDIX domain
Length = 147
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 333 GGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGL 512
G + V V I N +L+ + + LP G +E GE+ + A REV+EETGL
Sbjct: 4 GEAIPRVAVVVFILNGNSILLGRRRSSIGNSTFALPGGHLEFGESFEECAAREVMEETGL 63
Query: 513 QCDLKTLLVV 542
+ + LL V
Sbjct: 64 KIEKMKLLTV 73
>At4g12720.3 68417.m01998 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 282
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 TPTT-PSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGET 467
TP T P+N V+G A VI EVL++QE K W LP G + +GE
Sbjct: 92 TPDTIPANASHVVGAG-----ALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGED 146
Query: 468 IVQAAVREVLEETGLQCDLKTLL 536
I REV EETG+ D +L
Sbjct: 147 IWTGVAREVEEETGIIADFVEVL 169
>At4g12720.2 68417.m01997 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 282
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 TPTT-PSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGET 467
TP T P+N V+G A VI EVL++QE K W LP G + +GE
Sbjct: 92 TPDTIPANASHVVGAG-----ALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGED 146
Query: 468 IVQAAVREVLEETGLQCDLKTLL 536
I REV EETG+ D +L
Sbjct: 147 IWTGVAREVEEETGIIADFVEVL 169
>At4g12720.1 68417.m01996 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 282
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 TPTT-PSNFKPVLGGNVTYVVACVIINEFNEVLMMQEAKESCAGK--WYLPAGRMEKGET 467
TP T P+N V+G A VI EVL++QE K W LP G + +GE
Sbjct: 92 TPDTIPANASHVVGAG-----ALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGED 146
Query: 468 IVQAAVREVLEETGLQCDLKTLL 536
I REV EETG+ D +L
Sbjct: 147 IWTGVAREVEEETGIIADFVEVL 169
>At4g25434.1 68417.m03661 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 420 AGKWYLPAGRMEKGETIVQAAVREVLEETGLQ 515
+G W +P G +++GE I AA+REV EETG++
Sbjct: 134 SGIWKIPTGVVDEGEEIFAAAIREVKEETGVR 165
>At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase GI:1888557 from
[Lupinus angustifolius], [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 175
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 354 VACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGL 512
V +IN N L+ ++ + G W +P G +E GE AA+RE+ EETG+
Sbjct: 12 VGVCLINSDN--LVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEETGV 62
>At5g20070.1 68418.m02390 MutT/nudix family protein low similarity
to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.-)
{Caenorhabditis elegans}; contains Pfam profile PF00293:
NUDIX domain
Length = 438
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 351 VVACVIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQ 515
VV ++I+ N+ ++ W AG +E GE++ +A RE EETG++
Sbjct: 246 VVIMLVIDRENDRALLSRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIE 300
>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
mRNA-decapping enzyme [Homo sapiens] GI:23268269;
contains Pfam profile PF00293: NUDIX domain
Length = 373
Score = 34.3 bits (75), Expect = 0.072
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 351 VVACVIINE-FNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCDLK 527
V +I++E + L+++ K S W P G+ K E A+REVLEETG D+
Sbjct: 110 VTGAIILDETYERCLLVKGWKGS---SWSFPRGKKSKDEEDHACAIREVLEETGF--DVS 164
Query: 528 TLL 536
LL
Sbjct: 165 KLL 167
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 607 FNSPPIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAGKYH 428
F+SP + ++ ++++ PP ++ S S R S L + +PFS+
Sbjct: 63 FSSPTSLDSINDDVFRTPPENASLSSAAESEPRVGVSEIKLQGGSNLTTPFSMAETTLVS 122
Query: 427 FPAQLSFASCIISTS-LNSFIITQATT*VTLPPSTGLKL 314
L + +S S L S T TT V+ PS ++
Sbjct: 123 SSPSLPAENVRVSESNLKSSSSTAKTTPVSASPSVNARV 161
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 429 WYLPAGRMEKGETIVQAAVREVLEETGL 512
W +P G ++GE + AA RE+ EETG+
Sbjct: 89 WQMPQGGADEGEDLRNAAFRELREETGV 116
>At1g73540.1 68414.m08512 MutT/nudix family protein low similarity
to SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 198
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 384 EVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETGLQCDLKTLL 536
EVL++ K+ GK LP G E E+I +AA+RE +EE G+ L+ L
Sbjct: 80 EVLLISAQKK---GKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEESL 128
>At1g12880.1 68414.m01496 MutT/nudix family protein similar to
diphosphoinositol polyphosphate phosphohydrolase [Homo
sapiens] GI:3978224; contains Pfam profile PF00293:
NUDIX domain
Length = 203
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 438 PAGRMEKGETIVQAAVREVLEETGLQCDLKTL 533
P G E ET+++AA RE +EE G++ L+ L
Sbjct: 64 PKGGWEDDETVLEAASREAIEEAGVKGILREL 95
>At3g12600.1 68416.m01569 MutT/nudix family protein contains Pfam
profile PF00293: NUDIX domain
Length = 180
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 372 NEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQ 515
+E +V+ + S P G E ET+ +AA RE +EE G++
Sbjct: 39 SESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVR 86
>At3g26690.2 68416.m03338 MutT/nudix family protein similar to
SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 202
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 438 PAGRMEKGETIVQAAVREVLEETGLQ 515
P G E ET+++AA RE +EE G++
Sbjct: 63 PKGGWEDDETVLEAASREAMEEAGVK 88
>At3g26690.1 68416.m03337 MutT/nudix family protein similar to
SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 202
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 438 PAGRMEKGETIVQAAVREVLEETGLQ 515
P G E ET+++AA RE +EE G++
Sbjct: 63 PKGGWEDDETVLEAASREAMEEAGVK 88
>At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 429 WYLPAGRMEKGETIVQAAVREVLEETGL 512
W +P G +++GE A +RE+ EETG+
Sbjct: 90 WQMPQGGIDEGEDPRVAVMRELKEETGV 117
>At1g18300.1 68414.m02286 MutT/nudix family protein similar to
SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00293: NUDIX domain
Length = 207
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 423 GKWYL-PAGRMEKGETIVQAAVREVLEETGLQCDLKTLL 536
GK L P G E E++ +AA+RE +EE G+ +L+ L
Sbjct: 93 GKGMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKL 131
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 330 LGGNVTYVVACVIINEFNEVLMMQEAKESCAG 425
L N++ C I+NE E + ++E K+S G
Sbjct: 823 LTSNISSETKCAIVNEVLETIELEEIKDSIVG 854
>At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)
EXL4 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana (Mouse-ear cress)]
Length = 343
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 493 TSLTAACTIVSPFSI-LPAGKYHFPAQLSFASCIISTSLNSFIIT 362
+ +T T+ S + I A FPA L+F I+ T N+F++T
Sbjct: 3 SKITLVLTLFSSYFISTDAVNGSFPALLAFGDSILDTGNNNFLLT 47
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 417 CAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCDLKTLLVVETAGGSWYRF 572
C+ W L G + GE+++ + + + G + LK L + SW F
Sbjct: 2878 CSAPWMLRNGILTSGESLIHRGLMALADVEGARIHLKQLTIAHQI-TSWESF 2928
>At3g24560.3 68416.m03086 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 456
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 562 QEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSP 458
++ P TSK+L ++ R + TSLTAA +SP
Sbjct: 167 RQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSP 201
>At3g24560.2 68416.m03084 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 660
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 562 QEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSP 458
++ P TSK+L ++ R + TSLTAA +SP
Sbjct: 371 RQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSP 405
>At3g24560.1 68416.m03085 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 462
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 562 QEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSP 458
++ P TSK+L ++ R + TSLTAA +SP
Sbjct: 173 RQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSP 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,550
Number of Sequences: 28952
Number of extensions: 249780
Number of successful extensions: 726
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -