Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31472
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8) 31 0.85
SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41) 30 1.5
SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05) 30 2.0
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 29 2.6
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 29 3.4
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 4.5
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 28 6.0
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_368| Best HMM Match : WCCH (HMM E-Value=3.5) 28 7.9
>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
Length = 232
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 267 SPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRS-STRETILPSNSVLRQTQITTESHTAM 443
SPT+ ++ SS+T ++ P + S++ STRET+ ++ ++ + TT SH M
Sbjct: 109 SPTSHSHESIKTSSSTKNI-------PASKSQTLSTRETV--ASEIMPTSTRTTTSHVVM 159
Query: 444 PTTR 455
PTT+
Sbjct: 160 PTTQ 163
>SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41)
Length = 409
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 255 FLLPSLMRLLTVSSMMLPLDCFSSSRIR 172
F +P+++R+ S + L CF SSRIR
Sbjct: 354 FRVPAMIRICVTSELKFNLPCFQSSRIR 381
>SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)
Length = 420
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -1
Query: 238 DEIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGR 59
+E + ++ A+ + Q +S +G GDS++ P RS ++G N + V+ GR
Sbjct: 164 EETGEQVVSRAAINVIAFQAQGSSSSREVGQGDSLNLPNVRSNQTG-NYTITVSNQYGGR 222
Query: 58 QHA 50
A
Sbjct: 223 ASA 225
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 276 NCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPT 449
+C +G+ + T ++++ T+ ET+ N+ RQ IT +HT PT
Sbjct: 28 SCSAGKYNMETVTAVKYNMET----VTAVKYNMETVTAENTTWRQLHITAVTHTVTPT 81
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 216 RIPSTISSETAIGMF*SSPTNCGSGRVRKS-SNTTSLFSLDRCYPRATSRSSTRETILPS 392
R P SS + SS ++ GS +S S+T S S R R+ SRS +
Sbjct: 189 RSPRRSSSSYSSRSRSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSRSASRSQSHSVSRSR 248
Query: 393 NSVLRQTQITTESHTAMPTTRAARTSAGS 479
+ L Q++ ++SH+A + +R+ + S
Sbjct: 249 SKSLSQSRSRSQSHSASRSVSRSRSRSRS 277
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 676 VDVEQDLVVELSGLQVPL-VSVRVSAIISINAMVVFTIRTRSKFQVLVPTNTVDLEVNPV 500
+D E D E G+ PL S R + ++ ++ TI TRS + + + V
Sbjct: 373 IDKEPDS--EAVGVSYPLETSEREKEFVDVHGRIIKTIITRSVIRTWIVFDEKGNHVQDT 430
Query: 499 VLPERNQLPAD 467
PE +LP D
Sbjct: 431 NAPESEELPTD 441
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 362 IINKRDNLAIKLGAAADSDNDRIAYGDA-NDKSSENVSW 475
+INK DN +IK AAD+ D++ + D+ N+ + +W
Sbjct: 336 VINKGDNNSIKYLLAADTKADKVTWLDSLNEALKDYKAW 374
>SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 554 GTGTDGENDHSVYGDDRADT 613
G TD E DHSV+GDD + T
Sbjct: 167 GHCTDHEKDHSVHGDDTSPT 186
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 345 PRATSRSSTRETILPSNSVLRQTQITTESHTAMPTT 452
P A + SST T P+ V Q +TE+ T PTT
Sbjct: 79 PTAKTTSSTSSTSKPTEDVGTSPQPSTENETHTPTT 114
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 285 SGRVRKSSNT-TSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITT---ESHTAMPTT 452
S VRKS+ TS S R YPR S+T T + VLRQ + T + H+ T
Sbjct: 184 SALVRKSTRQPTSRRSASR-YPRKNKHSTTDITEISVTDVLRQQECVTHPLKKHSTTDIT 242
Query: 453 RAARTSA 473
+ T A
Sbjct: 243 EISVTDA 249
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 169 FSDSAARETIEWKHHRGYRQQSHQRR 246
FSDS E+ EWK HR ++ ++R
Sbjct: 421 FSDSKLLESHEWKEHRALKETGVKQR 446
>SB_368| Best HMM Match : WCCH (HMM E-Value=3.5)
Length = 115
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 348 RATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 479
R T R + L + + + Q+ T H A P TR A AGS
Sbjct: 72 RGTERRARERFALVLSDIAARGQLETGWHKAYPNTRPAGCDAGS 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,202,161
Number of Sequences: 59808
Number of extensions: 424082
Number of successful extensions: 1533
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -