Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31465
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44729| Best HMM Match : SET (HMM E-Value=0)                         29   2.4  
SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)                   28   5.5  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      27   9.6  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   9.6  
SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)             27   9.6  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                27   9.6  

>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 325 HFRQRCTSSRGPFHRGRRTSTVREPQEPH 239
           HF   C S++ P +RGR T  +R P   H
Sbjct: 503 HFCSTCISNKTPVNRGRLTKCIRCPTAYH 531


>SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)
          Length = 154

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 470 PIVFLVYKILTLQMIDNTLLGHF 402
           P++  ++K +T Q+ DN+L+ HF
Sbjct: 22  PVISFIHKCMTGQITDNSLIRHF 44


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 292 PFHRGRRTSTVREPQEPHFRYR 227
           PF R R    V+EP+EP+ +YR
Sbjct: 472 PFERYRFNRRVQEPREPYDQYR 493


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 124 ILQQTFDNIGVEGYGFGFETSDGKTAQESAVLKNVGTENEALEVRGQYSYVDLD 285
           +L+ T D + + G        DG TAQ SA+L  +  +N+    +G+     +D
Sbjct: 265 LLKNTLDTVFLRGQTI---VGDGTTAQLSAILTGIAEKNQPEARKGRKKATTVD 315


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 387  VGVGGLDLRELGNVCSGGMETIFVSGVRRLVDLSIEVDVRVLSANL 250
            V +GG   R++  + S     +FV G++RLV +   +  RV +A++
Sbjct: 2407 VSIGGGGRRQVTRIASTRSH-VFVVGIKRLVKIVGRIQARVCTASV 2451


>SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)
          Length = 211

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
 Frame = -3

Query: 362 GSWGMSAPEGW------KPFSSAVYVVSWTFPSRSTY 270
           G+WG+  PEGW       PF    Y +    PS++ +
Sbjct: 40  GNWGLEIPEGWGSYLRPPPFGGDGYFLELHIPSQTKH 76


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 178 ETSDGKTAQESAVLKNVGTENEALEVRGQYSYVDLDGKVHE 300
           ETSDG T QE   +K    E++  EVR      + D  + E
Sbjct: 449 ETSDGDTKQEVPFIKEEQIEDKGPEVRNDMEPHETDVPLQE 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,776
Number of Sequences: 59808
Number of extensions: 260176
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)