Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31461
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof...    31   0.63 
At4g39840.1 68417.m05645 expressed protein                             29   4.4  

>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 411

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 22  LLWEQERERERDVSTHFRSLFLSNLLKFISHS 117
           ++WE+E E + D     + LF  NL+KF+ HS
Sbjct: 124 IIWEEEEEADEDSE---KRLFEKNLMKFVGHS 152


>At4g39840.1 68417.m05645 expressed protein
          Length = 451

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 345 IV*IMRYLKDHLNIIKIECALDHTTEIKTSLAPSIYTYLSLSI*YNM*YV-YICTYHVNF 169
           ++ I  YL  + +I+ +   +     +K   A S  TY+ L I   + YV Y+    +  
Sbjct: 307 LIFIQIYLSIYFSILCLSSLVTGIEPLKFLYATSSSTYVCLQILQTLGYVFYLLLLLMYL 366

Query: 168 LQIFSFNCGFSL 133
           + +FS +CG  L
Sbjct: 367 VLVFSTDCGLGL 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,924
Number of Sequences: 28952
Number of extensions: 177352
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)