Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31458
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   189   7e-49
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           184   3e-47
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           180   3e-46
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.008
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.31 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.53 
At4g26980.1 68417.m03882 expressed protein                             27   5.0  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.0  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  189 bits (461), Expect = 7e-49
 Identities = 93/137 (67%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3   AFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 167
           AF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFTG VSI
Sbjct: 8   AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTI 347
           RGRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD VTI
Sbjct: 68  RGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTI 126

Query: 348 GECRPLSKTVRFNVLKV 398
           G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  184 bits (448), Expect = 3e-47
 Identities = 89/137 (64%), Positives = 103/137 (75%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3   AFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 167
           AF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFTG VSI
Sbjct: 8   AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTI 347
           RGRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD + I
Sbjct: 68  RGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIII 126

Query: 348 GECRPLSKTVRFNVLKV 398
           G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  180 bits (439), Expect = 3e-46
 Identities = 90/137 (65%), Positives = 103/137 (75%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3   AFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 167
           AF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFTG VSI
Sbjct: 8   AFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTI 347
           RGRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ GD V I
Sbjct: 68  RGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVII 126

Query: 348 GECRPLSKTVRFNVLKV 398
           G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 186 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 362
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 363 LSKTVRFNVLKV 398
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 174 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 353
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 354 CRPLSK 371
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 174 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 353
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 354 CRPLSKTVRFNVLKV 398
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 27  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 155
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 96  KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 200
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 171 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 287
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,845,272
Number of Sequences: 28952
Number of extensions: 194649
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)