Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31456
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   5.5  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   9.7  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 110  TVNNYVMCPIVCLSAKRLKFYLSGCLRC 193
            TV +++  P VC  ++   F LSGC+ C
Sbjct: 1608 TVISFLWRPDVCAISEHKAFILSGCIFC 1635


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 101  LSPTVNNYVMCPIVCLSAKRLKFYLSGCL 187
            LSP  NN  +  I  +S K L+++ +GC+
Sbjct: 1195 LSPEFNNSKVFSIPSISEKHLEWFENGCI 1223


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 90   IIKTFHQLSIIM*CAL*CVCLQRDLNFIYLAA-CAVSMCEQARYI 221
            I+  F  LS +  CA+    L   L ++YL A C  ++    RY+
Sbjct: 1838 ILALFVSLSYLCLCAICIFALSVSLRYLYLCAICIFALSVSLRYL 1882


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,315
Number of Sequences: 59808
Number of extensions: 182738
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)