Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31456
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive, put...    27   4.5  
At1g27440.1 68414.m03345 exostosin family protein contains Pfam ...    27   4.5  

>At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive,
           putative similar to aspartate kinase gi:2257743
           (Arabidopsis thaliana)
          Length = 559

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 125 VMCPIVCLSAKRLKFYLSGCLRCVYV*ASQIYK*SLSRSCPKLPVFLCLPTGIT*RI--S 298
           V  P + L++KR++F   G      V +++++  ++ RSC  + + +    G    +   
Sbjct: 10  VKTPELALNSKRIEFSSKGLNFSALVSSARVFSRNVDRSCKNIALRVTCEAGRVELLERK 69

Query: 299 CNDQIELTRTRKK 337
            ++  +L +T KK
Sbjct: 70  ASETFKLNKTEKK 82


>At1g27440.1 68414.m03345 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 412

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 308 GRYMIYVK*CPLEDTKRLVT*DRICLNFTYISGLLTHRHSASSQI 174
           G+  +YV   P +  K+L+  D  CL   + + +  HR   SS +
Sbjct: 44  GKLKVYVYELPSKYNKKLLQKDPRCLTHMFAAEIFMHRFLLSSPV 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,956,627
Number of Sequences: 28952
Number of extensions: 125383
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)