Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31453
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07230.1 68418.m00825 protease inhibitor/seed storage/lipid t...    29   4.3  
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    28   5.7  
At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil...    27   9.9  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   9.9  

>At5g07230.1 68418.m00825 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein identical to
           tapetum-specific protein A9 [Precursor] SP| Q00762;
           contains Pfam protease inhibitor/seed storage/LTP family
           domain PF00234
          Length = 91

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 377 TNCASERPCLNRDALCQSLRRNQTLSVYC 291
           +NC +     N+D LC +LR   TL+  C
Sbjct: 52  SNCCAALQATNKDCLCNALRAATTLTSLC 80


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 507 KRLHSESLTVPIALSYESSISLINA 433
           +R HSE LT+P  LS++S + ++ A
Sbjct: 74  RRAHSEILTLPDDLSFDSDLGVVGA 98


>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
           LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
           HMM hit: AMP-binding enzymes PF00501
          Length = 691

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 350 LNRDALCQSLRRNQTLSVYCAFKTLLRLDEALGVISNFESVRC 222
           L  +ALC SL   +  +V C  K L +L +    +   + V C
Sbjct: 165 LGEEALCHSLNETEVTTVICGSKELKKLMDISQQLETVKRVIC 207


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 44  VCVFLTSIQFK-NVITLKKEKKKHPCRIF 127
           VC    S+  K N++++ KEKKK   R+F
Sbjct: 541 VCTLKKSVNIKKNMVSISKEKKKEHQRVF 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,371
Number of Sequences: 28952
Number of extensions: 273668
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)