Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0922
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)                  33   0.27 
SB_11798| Best HMM Match : FeoB_C (HMM E-Value=9.3)                    32   0.63 
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)                  30   1.9  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        30   1.9  
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)                 29   4.5  
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)                  29   4.5  
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)                  28   7.8  

>SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +1

Query: 334 VIKLKTEYLXFLGCSWITNNSLIVAGHSCIPLLYCHDGDD-IKYVAKLDNTQRKE 495
           V+ ++T+ L  + C WIT NS++ AGH+ +P L+ HD +D +  + KLD  ++KE
Sbjct: 3   VVTIQTDLLPLMQCIWITENSIVAAGHNNMPYLFTHDDNDKLTLIGKLDAPKKKE 57


>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
          Length = 458

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 23  HIKKPIRSTVTSIDWHPNN-ILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQ 196
           HI K    +V  + WHP+N  L V  S D  +R++ A I    ++P P  W S  P  +
Sbjct: 71  HIYKGHNESVDQLCWHPSNPDLFVTASGDKTIRIWDARIL---ERPPPR-WSSNSPYSE 125


>SB_11798| Best HMM Match : FeoB_C (HMM E-Value=9.3)
          Length = 146

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 565 VSLVSIRA*RSKDWNFFIATVPQTPSSEYCRVWRHT 458
           +SL+  R    K  N FI T+P +P   YCR+W  T
Sbjct: 107 ISLIGQRLYARKQ-NNFIETLPVSPRDVYCRIWLRT 141


>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
          Length = 195

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 50  VTSIDWHPNNILLVAGSAD 106
           V  IDWHP+  LLV+GS D
Sbjct: 158 VKCIDWHPHKSLLVSGSKD 176


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256 SADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLXFLGCSWIT-NNSLIVAGHSCIPLL 432
           S DG KVA  + D+++ + +A+ G  +  L         C ++    S++    +CI + 
Sbjct: 645 SPDGGKVASCSDDNTVRIWEASSGEDLCLLDDHTSSVSFCCFMNQGESVVTVCSNCIKVW 704

Query: 433 YCHDGD 450
            C  G+
Sbjct: 705 SCSSGE 710


>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
 Frame = +2

Query: 47  TVTSIDWHPNN-ILLVAGSADFKVRVF--SAYIK-DIEDQPG 160
           T+T+I WHP++  L  AG +D ++RV+  +A IK  I+D  G
Sbjct: 295 TITAIAWHPSSRYLASAGGSDRQIRVWHNAAGIKVQIDDLKG 336


>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
          Length = 456

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 39  FVRL*HLLIGIPITFCSSLALLTSKYESSLPISRISKISLDRM 167
           FVR    L  +  T C+ + + +S+++SS+P  R + +S  RM
Sbjct: 379 FVRKYPKLSAVDATNCAGVRVFSSEFDSSMPYGRKASLSDTRM 421


>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
          Length = 365

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 50  VTSIDWHP-NNILLVAGSADFKVRVFSAYIKDIEDQPGP 163
           +TS++WHP +  +  A SAD ++ ++   ++  E   GP
Sbjct: 278 ITSVEWHPTDGSVFAASSADNQITLWDLAVERDEAAEGP 316


>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
          Length = 453

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  RSTVTSIDWHPNN-ILLVAGSADFKVRVFS 127
           R T+T+I W+P+N  +L +  AD +V ++S
Sbjct: 61  RKTITAIAWNPHNEDILASAGADCRVLIWS 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,469,680
Number of Sequences: 59808
Number of extensions: 494167
Number of successful extensions: 1452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)