Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0775
         (808 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P52167-3 Cluster: Isoform 3 of P52167 ; n=1; Bombyx mor...    92   1e-17
UniRef50_P52167 Cluster: Transcription factor BCFI; n=3; Bombyx ...    92   1e-17

>UniRef50_P52167-3 Cluster: Isoform 3 of P52167 ; n=1; Bombyx
           mori|Rep: Isoform 3 of P52167 - Bombyx mori (Silk moth)
          Length = 477

 Score = 92.3 bits (219), Expect = 1e-17
 Identities = 47/73 (64%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = +2

Query: 38  RRSPPRLGYYVQSAEGMKXEEPQHHVMYIGVPELGXXXXXXXXXXSAVSLA-S*ASRPTP 214
           RRSPPRLGYYVQSAEGMK EEPQHHVMYIGVPELG          +    + +  SRPTP
Sbjct: 373 RRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPDTRTRRTTTTPPCRSPAETSRPTP 432

Query: 215 NXXXXXSTFVVYI 253
           N     STFVVYI
Sbjct: 433 NIIIIISTFVVYI 445


>UniRef50_P52167 Cluster: Transcription factor BCFI; n=3; Bombyx
           mori|Rep: Transcription factor BCFI - Bombyx mori (Silk
           moth)
          Length = 508

 Score = 92.3 bits (219), Expect = 1e-17
 Identities = 47/73 (64%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = +2

Query: 38  RRSPPRLGYYVQSAEGMKXEEPQHHVMYIGVPELGXXXXXXXXXXSAVSLA-S*ASRPTP 214
           RRSPPRLGYYVQSAEGMK EEPQHHVMYIGVPELG          +    + +  SRPTP
Sbjct: 404 RRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPDTRTRRTTTTPPCRSPAETSRPTP 463

Query: 215 NXXXXXSTFVVYI 253
           N     STFVVYI
Sbjct: 464 NIIIIISTFVVYI 476


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,925,993
Number of Sequences: 1657284
Number of extensions: 8531320
Number of successful extensions: 16397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16388
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)