Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0741
         (541 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DHU3 Cluster: dTDP-D-glucose 4,6-dehydratase, putativ...    32   9.7  
UniRef50_Q00774 Cluster: Dehydroshikimate dehydratase; n=1; Emer...    32   9.7  

>UniRef50_A2DHU3 Cluster: dTDP-D-glucose 4,6-dehydratase, putative;
           n=1; Trichomonas vaginalis G3|Rep: dTDP-D-glucose
           4,6-dehydratase, putative - Trichomonas vaginalis G3
          Length = 458

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 463 RFPTGRVYGYHAVDEEVLYSGRSXIGNFSSGRRSRCYLLHEPEIG 329
           + P+G + GY A++E+V+Y+     GN   G ++ CY   +PE G
Sbjct: 104 KIPSGVIRGYLALEEDVIYNIVRTSGN---GNKT-CYKFDDPEFG 144


>UniRef50_Q00774 Cluster: Dehydroshikimate dehydratase; n=1;
           Emericella nidulans|Rep: Dehydroshikimate dehydratase -
           Emericella nidulans (Aspergillus nidulans)
          Length = 348

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 205 RRRSMIXPWSSAWRRSFLNGP 143
           RRR +  PW S WRRS L+ P
Sbjct: 204 RRRMLSKPWPSPWRRSVLSSP 224


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,611,934
Number of Sequences: 1657284
Number of extensions: 8046650
Number of successful extensions: 17421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17416
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)