Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0741
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   5.6  
SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 415  VLYSGRSXIGNFSSGRRSRCYLLHEPEIGSLSICLKLTCNQ 293
            +++ G +  G FS+G+      + +  +GS+ IC+KL C +
Sbjct: 1270 LIHEGVTLRGGFSAGK-----FIAQGHVGSMQICIKLCCRR 1305


>SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 492 SASWCIRLNTGSQPAVSTVIMRSMKKSCTVGALXSGTFLPAGGVAVISCTSPRSVRLASV 313
           ++ W IR   G  P+V+  I   +  + T+    S  FLP+   + ++ T PR+   +SV
Sbjct: 12  TSPWQIRPAYGFAPSVTLPISLRLCSASTLELSNSFNFLPSQTSSPVAKTQPRNSSTSSV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,573
Number of Sequences: 59808
Number of extensions: 256699
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)