Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0741
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    29   2.6  
At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)...    28   3.5  
At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containi...    27   8.0  
At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    27   8.0  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    27   8.0  

>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 540 FGDF--GSERRII*KLNISASWCIRLNTGSQPAVSTVI 433
           FGD     E +I  KL + A WCI++N   +P +  VI
Sbjct: 565 FGDSITDEEEKIAKKLVLVALWCIQMNPSDRPPMIKVI 602


>At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)
           family protein similar to SP|O93806
           Glucosamine-phosphate N-acetyltransferase (EC 2.3.1.4)
           (Phosphoglucosamine transacetylase) (Phosphoglucosamine
           acetylase) {Candida albicans}; contains Pfam profile
           PF00583: acetyltransferase, GNAT family
          Length = 149

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
 Frame = +1

Query: 76  ERIXSXVXDHVIRXMXAESSDKVAHLENYDAMLRTMXKSLNVCGKDGCYSEIQLDNXL-- 249
           E I S   DHVI  +  E+S K+A       M+    K L  CGK G   ++ +D+    
Sbjct: 42  EEIRSYGDDHVICVIEEETSGKIA--ATGSVMIE--KKFLRNCGKAGHIEDVVVDSRFRG 97

Query: 250 --LEKXTVQ--INXCN*AIGCTSVLDRC 321
             L K  V+  ++ C  ++GC  V+  C
Sbjct: 98  KQLGKKVVEFLMDHCK-SMGCYKVILDC 124


>At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1274

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 529 WIRASYNLEIEHLGELVH*TEHRFPTGRVY--GYHAVDEEVLYSGRS 395
           W+     LE +H+ +LV  T H     R+Y    H + E  L SG+S
Sbjct: 59  WVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKS 105


>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 401 PTVQDFFIDRMITVDTAGWEPVFSLMHQLAEM 496
           P +  F  DRM+  D + W  + +L  Q+ +M
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 456 QPAVSTVIMRSMKKSCTVGALXSGTFLPAGGVAVIS 349
           + AV T I+RS+  SC  G L    FL  G  +VIS
Sbjct: 818 ESAVQTKILRSL--SCLEGMLSLSNFLLKGSASVIS 851


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,439,319
Number of Sequences: 28952
Number of extensions: 177766
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)