Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0738
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095) 31 1.1
SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12) 31 1.5
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 30 2.6
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 29 4.5
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 29 6.0
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 149 bits (362), Expect = 2e-36
Identities = 65/90 (72%), Positives = 75/90 (83%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K + HRTADEIS E+ V V +LR P+ D R ++ KWLV+IGVCTHLGCVP++NAGE+
Sbjct: 123 KPLFVRHRTADEISEEQNVDVASLRHPEADADRVKDDKWLVLIGVCTHLGCVPISNAGEY 182
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
GGY CPCHGSHYDASGRIRKGPAPLNLEVP
Sbjct: 183 GGYYCPCHGSHYDASGRIRKGPAPLNLEVP 212
Score = 50.0 bits (114), Expect(2) = 1e-10
Identities = 30/79 (37%), Positives = 42/79 (53%)
Frame = +1
Query: 232 IPGFLGLPRKETQDPTSKANETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAA 411
+P F G R+ + K T R++FTYL+ +F+S+MSA+A
Sbjct: 1 MPDF-GDYRRPSTSEVGKTETTEIGRRAFTYLVVAGMGVTGVHAGKNLLVNFLSTMSASA 59
Query: 412 DVLALAKIEIKLAEIPEGK 468
DVLA+AKIE+ L IPE K
Sbjct: 60 DVLAMAKIEVDLNTIPEEK 78
Score = 33.9 bits (74), Expect(2) = 1e-10
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 454 IPEGKSVTFKWRGKPLFI 507
I GK++ FKWRGKPLF+
Sbjct: 110 ITSGKNMVFKWRGKPLFV 127
>SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)
Length = 250
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 676 VTNVPATAPTTMLPDESAKAPPLST*KCPP-HVHGPRLASCR 798
V+ VP T + + P +++K PP K PP H P AS R
Sbjct: 148 VSKVPPTDASKVPPTDASKVPPTDAIKAPPTHATHPPFASWR 189
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 586 NAPKTPSGWS*SAYAPTWDACP*PMLVNSGVTNVPATAPTTMLPDESAKAPPLST*KCPP 765
+A K P + ++ PT DA P + + VP T + + P +++K PP K PP
Sbjct: 33 DASKVPPTDANASKVPTTDASKVP---TTDASKVPPTDASKVPPTDASKVPPTDASKVPP 89
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 631 PTWDACP*PMLVNSGVTNVPATAPTTMLPDESAKAPPLST*KCPP 765
PT DA P + V+ VP T + + P +++K PP K PP
Sbjct: 96 PTTDASKVP---TTDVSKVPPTDASKVPPTDASKVPPTDASKVPP 137
>SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 114 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 28
GR V++ V T TR + AT WVED+K
Sbjct: 52 GRPDVYATQVHTVTRSKKDAATIWVEDIK 80
>SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 114 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 28
GR V++ V T TR + AT WVED+K
Sbjct: 52 GRPDVYATQVHTVTRSKKDAATIWVEDIK 80
>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
Length = 495
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = -1
Query: 735 GLCGFVRKHRSG-SRGR---DISNPRIHQHWLRARIPSGCIRRSRPTTWGFGCVDRRAEG 568
G GF R++ + RGR D+ + R +WL G P G + R + G
Sbjct: 308 GEAGFRRRYPADFDRGRAKEDVEDTRGVLYWLGTN--GGLTEWKNPGEAGLVTITRSSYG 365
Query: 567 HGACRQAQPSRSRFRLLSCEDKQWFSSPFEGDR 469
HG A R + S + QW+ F GD+
Sbjct: 366 HGKATDAADRRPSWCSTSNKPNQWWKIDF-GDK 397
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 529 SRPRRLCLSTRSVTLSTTINAPKTPSGWS*SAYAPTWDACP*PMLVNSGVTNVPATAPTT 708
S+P L ++ + T ++TI PKTP + S+ + P P V S P A T
Sbjct: 409 SKPAWLTQNSNTTTTTSTIATPKTPDTTAASSADTSSPNAPTPSFVQSNSQPKPKPAWLT 468
Query: 709 MLPDE 723
P +
Sbjct: 469 QAPTQ 473
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = +2
Query: 17 LAPYFKSSTQVVANSLKPLV---VVPTPSEKTVVLPLPKTSTVETLH--GSLPIQGLKVK 181
L P + A S PL + P+P+ P P S V+ H S P +K
Sbjct: 313 LTPQASMKQPIAAGSPTPLKGSSIPPSPNRSPAASPAPSPSAVKPFHPVSSAP-SAIKFP 371
Query: 182 AGTRVPAQVRFAHTDISYPDFSAYLAK 262
A VPA +S+P S +A+
Sbjct: 372 AKPNVPAPGTIMPAPVSHPVASPKVAQ 398
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 457 EFQPA*FQSWLKPKHQQPLTLMTQSG 380
+F P+ F ++L P+ Q P LM+ SG
Sbjct: 422 DFDPSEFDAYLNPEQQDPALLMSPSG 447
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 743 RGGAFADSSGSIVVGAVAGTLVTPEFTSIGYGHASQVGAYADHDQPLGVL 594
RG ++D ++ G +AG LV P + G A G Q LGV+
Sbjct: 799 RGLLYSDVIAGLIAGVIAGLLVDPSLDARGLSGAFYAGGRQLGVQLLGVV 848
>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 646 THPKWVHTPITTNHL 602
THPK +TP+T NH+
Sbjct: 16 THPKLTYTPVTPNHI 30
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = +1
Query: 526 KSRPRRLCLSTRSVTLSTTINAPKTPSGWS*SAYAPTWDACP*PMLVNSGVTNVPATAPT 705
+ R RR + + T + P P+ + PT P P V++ ++P PT
Sbjct: 262 RHRARRQVILNLAPTPTPAQKKPYIPTKILQATPTPTATIAPPPSRVDASTVSIPTVRPT 321
Query: 706 TMLPDESA 729
+P +A
Sbjct: 322 VTVPSNNA 329
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,844,064
Number of Sequences: 59808
Number of extensions: 599457
Number of successful extensions: 1771
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -