Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0738
(819 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s... 140 8e-34
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s... 140 1e-33
At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur sub... 62 6e-10
At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur sub... 62 6e-10
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 33 0.30
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 33 0.30
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 33 0.30
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 29 2.8
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 4.9
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 6.5
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 28 8.6
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 28 8.6
At3g61750.1 68416.m06925 auxin-responsive protein -related simil... 28 8.6
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 28 8.6
>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
non-consensus AT acceptor splice site at exon 2
Length = 272
Score = 140 bits (340), Expect = 8e-34
Identities = 58/90 (64%), Positives = 70/90 (77%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K + RT D+I +V V +LRDPQ D R +NP+WLVV+GVCTHLGC+P+ NAG++
Sbjct: 170 KPVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDY 229
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
GG+ CPCHGSHYD SGRIRKGPAP NLEVP
Sbjct: 230 GGWFCPCHGSHYDISGRIRKGPAPYNLEVP 259
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +1
Query: 307 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 486
+++F Y + + SMSA+ DVLALA +E+ L I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKW 167
Query: 487 RGKPLFI 507
RGKP+FI
Sbjct: 168 RGKPVFI 174
>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
Length = 274
Score = 140 bits (339), Expect = 1e-33
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K + RT D+I +V V +LRDPQ D R +NP+WL+V+GVCTHLGC+P+ NAG++
Sbjct: 172 KPVFIRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDY 231
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
GG+ CPCHGSHYD SGRIRKGPAP NLEVP
Sbjct: 232 GGWFCPCHGSHYDISGRIRKGPAPYNLEVP 261
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +1
Query: 307 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 486
+++F Y + + SMSA+ DVLALA +E+ L I G +VT KW
Sbjct: 110 KRAFAYFVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKW 169
Query: 487 RGKPLFI 507
RGKP+FI
Sbjct: 170 RGKPVFI 176
>At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 210
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = +3
Query: 594 QNPKWLVVIG---VCTHLGCVPVANAGEFGGY*CPCHGSHYDASGRIRKGPAPLNL 752
+N K L G VCTHLGCV N E + CPCHGS Y+A GR+ +GPAPL+L
Sbjct: 124 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSL 178
>At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 229
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = +3
Query: 594 QNPKWLVVIG---VCTHLGCVPVANAGEFGGY*CPCHGSHYDASGRIRKGPAPLNL 752
+N K L G VCTHLGCV N E + CPCHGS Y+A GR+ +GPAPL+L
Sbjct: 143 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSL 197
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/89 (25%), Positives = 33/89 (37%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K YP ++ + VP++ P R ++ K V C H C
Sbjct: 218 KNFWYPVAFTADLKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNE 276
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEV 758
G CP HG Y G +K P+ L+V
Sbjct: 277 GRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/89 (25%), Positives = 33/89 (37%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K YP ++ + VP++ P R ++ K V C H C
Sbjct: 218 KNFWYPVAFTADLKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNE 276
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEV 758
G CP HG Y G +K P+ L+V
Sbjct: 277 GRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/89 (25%), Positives = 33/89 (37%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K YP ++ + VP++ P R ++ K V C H C
Sbjct: 218 KNFWYPVAFTADLKHDTMVPIECFEQPWVIF-RGEDGKPGCVRNTCAHRACPLDLGTVNE 276
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEV 758
G CP HG Y G +K P+ L+V
Sbjct: 277 GRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 630 CIRRSRPTTWGFGCVDRRAEGHGAC 556
C + + P+TW + C D RA H C
Sbjct: 562 CEKETNPSTWFYTCKDHRASLHTKC 586
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +2
Query: 461 KESLSPSNGEENHCLSSQDSRRNLDREGCACRHAP*PSARRSTHPKPQVVGRDRRMHPLG 640
++ SPS H RR R +P P ARR P P + R+R PL
Sbjct: 348 RQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSP-LYRRNRSPSPLY 406
Query: 641 MRARSQ 658
R RS+
Sbjct: 407 RRNRSR 412
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 630 CIRRSRPTTWGFGCVDRRAEGHGAC 556
C + + P TW + C D RA H C
Sbjct: 570 CEKETNPNTWFYTCKDHRASLHTWC 594
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 630 CIRRSRPTTWGFGCVDRRAEGHGAC 556
C + + P TW + C D RA H C
Sbjct: 474 CEKETYPKTWFYTCKDHRASLHTKC 498
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 477 LQMERKTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQN 599
L+ E+K V P + A E+S E D D DD++T++
Sbjct: 104 LETEKKDDVTPVKEAAELSKEHTTKKDGKEDMTGDDEKTKD 144
>At3g61750.1 68416.m06925 auxin-responsive protein -related similar
to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana];
Length = 398
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +2
Query: 77 VVPTPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYL 256
VVP E L L K V LHG++ +VK RVP + +YP L
Sbjct: 132 VVPDQGE----LQLQKVPPVVALHGAMIYLAFQVKFAVRVPRRAVILAFSTAYPSKLGRL 187
Query: 257 AK 262
K
Sbjct: 188 TK 189
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 58 QPETSGGRTNTLRENGRPALA 120
QP T GGR R NGRP +A
Sbjct: 639 QPRTMGGRPLQYRPNGRPNMA 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,332
Number of Sequences: 28952
Number of extensions: 416397
Number of successful extensions: 1276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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