Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0736
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                   93   2e-19
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   2.8  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           28   4.9  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +2

Query: 59  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 238
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 239 SVLEF 253
           SV EF
Sbjct: 86  SVEEF 90



 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 34/78 (43%), Positives = 43/78 (55%)
 Frame = +1

Query: 256 GQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVTDEG 435
           G ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++DV+D  
Sbjct: 92  GSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISHDVSDLD 151

Query: 436 DHTRIVVSPKNLIKAPPI 489
            HT +V  P N+IKA  +
Sbjct: 152 QHTLVVAEPSNVIKADTV 169


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 279 YGLTVYLSTNSSTEGANTMRFLYKYSPYFDRTR 181
           YG+T+ L   SSTEG   + FL KY+ ++ R++
Sbjct: 694 YGVTLGL-LQSSTEGTEDLVFLLKYAKFYMRSQ 725


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = -3

Query: 456  YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 277
            Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 860  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPSVIAWLKARRSHSRF-Y 910

Query: 276  GLTVYLSTNSSTEGANTMRFLYKYSPYFD 190
            G  +Y ++  S +  +      KY PYF+
Sbjct: 911  GGDIYTNSEISRDPCSPWGISKKYYPYFE 939


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 398 TAADSSSISNPHSEAISLYTSPAAALP 318
           TA   S+I++PH+  +S  T+PAA  P
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSP 502


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = -3

Query: 456 YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 277
           Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 10  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPRVIAWLKARRSHSRF-Y 60

Query: 276 GLTVYLSTNSSTEGANTMRFLYKYSPYFD 190
           G  +Y ++  S +  +      KY PYF+
Sbjct: 61  GGDIYTNSEISRDPCSPWGISKKYYPYFE 89


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 264 YLSTNSSTEGANTMRFLYKYSP---YFDRTRFASSASLNVKP*P 142
           YL  +++  GA  +  LY       YFD  R   +A L VKP P
Sbjct: 803 YLQVDNANRGAEFVLTLYNAGQTEFYFDTARLVRNAVLAVKPLP 846


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,208
Number of Sequences: 59808
Number of extensions: 272086
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)