Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0736
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    80   9e-16
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   3.0  
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    27   5.3  
At2g46180.1 68415.m05742 intracellular protein transport protein...    27   6.9  
At3g20070.2 68416.m02539 expressed protein                             27   9.2  
At3g20070.1 68416.m02538 expressed protein                             27   9.2  
At3g09540.1 68416.m01133 pectate lyase family protein simliar to...    27   9.2  

>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 34/64 (53%), Positives = 47/64 (73%)
 Frame = +2

Query: 62  DHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 241
           D   LVL+D+L++K +HS FF +L+ RG+ L FKLA+D+ L L +YG+YLY  LI+FAPS
Sbjct: 30  DRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPS 89

Query: 242 VLEF 253
              F
Sbjct: 90  TERF 93



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = +1

Query: 247 RVCGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAA-VIDHFNYDV 423
           R  G +DS++I  F+D              D+ R IA+ECG + DE+S+A VIDH ++ V
Sbjct: 92  RFGGSLDSKSIADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSFSV 151

Query: 424 TD-EGDHTRIVVSPKNLIKAPPIV 492
           +D +GDHT  +++  +L+K+  I+
Sbjct: 152 SDVDGDHT--LIAADDLVKSDVIL 173


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 426 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHK 310
           S I V  +  CCRFL+  +S+    FS   SG+ + S K
Sbjct: 5   SCICVSAMKPCCRFLISFRSSSLFGFSPPNSGKFINSSK 43


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 410 KWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLST 261
           K  +   D+ SIS P+S+ +S    PA  +  I  + P     ++  L T
Sbjct: 382 KMLLEVEDNQSISTPYSQLVSEVILPAVRVSGINTWEPRDPEPMLRLLET 431


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 273 LTVYLSTNSSTEGANTMRFLYKYSP 199
           LT+Y STN  T+  N+  F Y  SP
Sbjct: 30  LTIYGSTNGGTDRRNSNGFRYSRSP 54


>At3g20070.2 68416.m02539 expressed protein
          Length = 282

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 377 ISNPHSEAISLYTSPAAALPAIRRFPPSSM-NLVMASLSTCPQTRARKERIL*DSC 213
           I+NP+ E   L   P A+L   +R  P  M  ++  S S CP    R  R++  +C
Sbjct: 228 INNPNGEESELLYKP-ASLGTFQRVAPEWMREVIKFSTSMCPIFFERVSRVIKLNC 282


>At3g20070.1 68416.m02538 expressed protein
          Length = 282

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 377 ISNPHSEAISLYTSPAAALPAIRRFPPSSM-NLVMASLSTCPQTRARKERIL*DSC 213
           I+NP+ E   L   P A+L   +R  P  M  ++  S S CP    R  R++  +C
Sbjct: 228 INNPNGEESELLYKP-ASLGTFQRVAPEWMREVIKFSTSMCPIFFERVSRVIKLNC 282


>At3g09540.1 68416.m01133 pectate lyase family protein simliar to
           style development-specific protein 9612 SP:P24396 from
           [Lycopersicon esculentum]
          Length = 378

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 381 VHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGYGLTVY 262
           VHL + +   ++IY  G GV S       +YE G   TV+
Sbjct: 255 VHLFNNYTRHWAIYAVGAGVESQIHSQCNIYEAGEKKTVF 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,632
Number of Sequences: 28952
Number of extensions: 192556
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)