Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0734
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 74 8e-14
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 74 8e-14
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 58 7e-09
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 47 1e-05
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 41 0.001
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 40 0.001
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 40 0.002
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 37 0.011
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.020
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 36 0.034
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.045
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 35 0.045
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 35 0.045
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 34 0.079
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 34 0.079
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 34 0.10
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 34 0.10
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 34 0.10
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 34 0.10
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 33 0.18
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 33 0.18
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 33 0.24
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 33 0.24
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 33 0.24
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 33 0.24
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 33 0.24
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.24
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 32 0.32
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 32 0.32
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 32 0.32
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.42
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 32 0.42
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 32 0.42
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 32 0.42
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.74
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.74
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 31 0.74
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.98
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 31 0.98
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 31 0.98
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.98
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 0.98
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 30 1.3
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 30 1.3
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 30 1.3
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 30 1.3
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 30 1.3
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 30 1.7
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 30 1.7
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.7
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 30 1.7
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 30 1.7
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 30 1.7
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 2.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 2.3
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 29 2.3
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 29 2.3
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 2.3
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 29 2.3
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 29 2.3
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 3.0
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 3.0
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 3.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.0
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 3.0
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 3.0
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 29 3.0
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 29 3.0
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 29 3.0
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 3.0
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 29 3.0
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 3.9
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 3.9
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 3.9
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 29 3.9
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 29 3.9
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 29 3.9
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 29 3.9
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 3.9
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 3.9
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 5.2
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 28 5.2
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 28 5.2
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 28 5.2
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 28 5.2
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 28 5.2
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 5.2
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 28 6.9
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 6.9
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 28 6.9
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 9.1
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 27 9.1
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 27 9.1
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 27 9.1
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 27 9.1
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 27 9.1
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 74.1 bits (174), Expect = 8e-14
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +1
Query: 247 ERADSLRQEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAK 414
ER + L++ +R R DT +A+ ++ G + RTL+GH K
Sbjct: 8 ERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGK 67
Query: 415 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXSYVACGGL 594
+Y++ W + +VSASQDG+LIVW++ T+ + + VACGGL
Sbjct: 68 VYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGL 127
Query: 595 DNICSIYS 618
D++CSI+S
Sbjct: 128 DSVCSIFS 135
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 74.1 bits (174), Expect = 8e-14
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +1
Query: 247 ERADSLRQEAETLKNAIRDARKAACDTSLAQATS----NLEPIGRIQMRTRRTLRGHLAK 414
ER + L++ +R R DT +A+ ++ G + RTL+GH K
Sbjct: 8 ERHAVATETVNNLRDQLRQRRLQLLDTDVARYSAAQGRTRVSFGATDLVCCRTLQGHTGK 67
Query: 415 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXSYVACGGL 594
+Y++ W + +VSASQDG+LIVW++ T+ + + VACGGL
Sbjct: 68 VYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGL 127
Query: 595 DNICSIYS 618
D++CSI+S
Sbjct: 128 DSVCSIFS 135
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 412 KIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXSYVACGG 591
++Y++ W + +VSASQDG+LIVW++ T+ + + VACGG
Sbjct: 5 QVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGG 64
Query: 592 LDNICSIYS 618
LD++CSI+S
Sbjct: 65 LDSVCSIFS 73
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
L+GH ++I + W SD+R L S D KL VW+ H+T R C H
Sbjct: 288 LKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQHSTQPVLRF-CEH 333
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
RGH+ +Y + W +DSR L+S S+D L +W+ T
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRT 433
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T +GH + + W D ++LVS S+ G++ W+
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWN 179
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 337 QATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
QA + P+ R +T+ GH + + + D + L S S D + +WD +T
Sbjct: 90 QAVFRIRPVNRCS----QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYT 140
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 504
L GH +++ + W D+R L S D +L VW+ H+T
Sbjct: 331 LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 367
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 367 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
R+Q L GH +++ + W D R L S D +L+VW++H+
Sbjct: 285 RVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHS 329
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
L+GH I +HW SD +VSAS D + WD T
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVET 127
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH---TTNRCTR 519
TL GH I M D L++ D KL VWD NRC +
Sbjct: 217 TLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVK 262
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCT 516
TLRGH A + ++W D L S S D + +W+ T CT
Sbjct: 113 TLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMR-TGMCT 153
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
LRGHL+ + + W + S S D +I+W
Sbjct: 156 LRGHLSLVKGVTWDPIGSFIASQSDDKTVIIW 187
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQD 471
R TLR H + + W +SR + S S D
Sbjct: 50 RLLATLRDHFGSVNCVRWAKNSRYVASGSDD 80
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 35.5 bits (78), Expect = 0.034
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 364 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 498
GR+ ++ +L GH +++ M W L S DG + +W S+
Sbjct: 266 GRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSN 310
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
GH + I + W SDS SAS D L +WD+ + C + H
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGH 127
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 334 AQATSNLEPIGRIQM----RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
A +T N G + + R +TL GH A I + + +D L SAS D +I+W +
Sbjct: 15 ANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSA 72
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
R ++ H I ++H+ D +VSAS DG +WD+
Sbjct: 164 RMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDA 199
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
+ LRGH ++ +++ S +VS S D + +W+ T +C R AH
Sbjct: 122 KVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEV-KTGKCVRMIKAH 169
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 35.1 bits (77), Expect = 0.045
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 253 ADSLRQEAETLK---NAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 423
ADS+R+ L+ N A+ D S T L + I M R GH + A
Sbjct: 212 ADSVRRRCSVLQWNPNVTTQIMVASDDDS--SPTLKLWDMRNI-MSPVREFTGHQRGVIA 268
Query: 424 MHW-GSDSRNLVSASQDGKLIVWDSHT 501
M W SDS L++ ++D + I WD++T
Sbjct: 269 MEWCPSDSSYLLTCAKDNRTICWDTNT 295
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 35.1 bits (77), Expect = 0.045
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 253 ADSLRQEAETLK---NAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 423
ADS+R+ L+ N A+ D S T L + I M R GH + A
Sbjct: 212 ADSVRRRCSVLQWNPNVTTQIMVASDDDS--SPTLKLWDMRNI-MSPVREFTGHQRGVIA 268
Query: 424 MHW-GSDSRNLVSASQDGKLIVWDSHT 501
M W SDS L++ ++D + I WD++T
Sbjct: 269 MEWCPSDSSYLLTCAKDNRTICWDTNT 295
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 34.3 bits (75), Expect = 0.079
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSHTTNRCTRS 522
R R TL GH K+ A+ SR++VSA+ D + +WD H CT +
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLH-KGYCTNT 353
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 349 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRC 513
NL IQ +L G + ++Y++ G+D L + +QDG ++VW ++T C
Sbjct: 204 NLVKAWNIQNNADLSLNGPVGQVYSLVVGTDL--LFAGTQDGSILVWRYNSTTSC 256
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRC 513
++ H I AM + D R L SA +DG L VW RC
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERC 286
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRC 513
++ H I AM + D R L SA +DG L VW RC
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERC 286
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+ ++ R RGH +I + + D + ++S+S DG L +WD
Sbjct: 545 VTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHT 501
GH + I + W + NL SA +DG+L++WD+ T
Sbjct: 215 GHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRT 249
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 504
L GH + Y + W L+S SQD K+ +WD T
Sbjct: 164 LVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSAT 201
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH-XXXXXXXXXX 564
+TL GH + +++ S +VS S D + +WD TT +C + AH
Sbjct: 107 KTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDV-TTGKCLKVLPAHSDPVTAVDFNR 165
Query: 565 XXSYVACGGLDNICSIY 615
S + D +C I+
Sbjct: 166 DGSLIVSSSYDGLCRIW 182
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
GH I + + SD+R +VSAS D L +WD T
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVET 102
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
GH IYA+ W DS+ +++ S D VW+
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSADKSAKVWE 124
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH--TTNRCTRSRCAHXXXXXX 552
+ ++L H + + W D L+S S D I+WD + + ++ + C +
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHY--VQGV 101
Query: 553 XXXXXXSYVACGGLDNICSIYS 618
YVA D C IY+
Sbjct: 102 AWDPLAKYVASLSSDRTCRIYA 123
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH--TTNRCTRSRCAHXXXXXX 552
+ ++L H + + W D L+S S D I+WD + + ++ + C +
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHY--VQGV 160
Query: 553 XXXXXXSYVACGGLDNICSIYS 618
YVA D C IY+
Sbjct: 161 AWDPLAKYVASLSSDRTCRIYA 182
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH--TTNRCTRSRCAHXXXXXX 552
+ ++L H + + W D L+S S D I+WD + + ++ + C +
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHY--VQGV 160
Query: 553 XXXXXXSYVACGGLDNICSIYS 618
YVA D C IY+
Sbjct: 161 AWDPLAKYVASLSSDRTCRIYA 182
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +1
Query: 367 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
RI+ T RGH ++ + W + L S D + +WD + + ++ H
Sbjct: 253 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLH 308
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +1
Query: 367 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
RI+ T RGH ++ + W + L S D + +WD + + ++ H
Sbjct: 243 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLH 298
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 32.7 bits (71), Expect = 0.24
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
GH IYA+ W D + +++ S D +WD
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
R GH + + ++ D R + S +DG +++WD +T RC H
Sbjct: 535 RIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDL-STARCITPLMGH 582
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 322 DTSLAQATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
D +LA A+ L+ + R+ +RT R++ +GH+ ++++++ + +L S +D + +W
Sbjct: 392 DGALA-ASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
Query: 490 D 492
D
Sbjct: 451 D 451
Score = 30.7 bits (66), Expect = 0.98
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXSY- 576
GH +Y + + D S D VWD T R H Y
Sbjct: 379 GHSRSVYGIAFQQDGALAASCGLDSLARVWDLR-TGRSILVFQGHIKPVFSVNFSPNGYH 437
Query: 577 VACGGLDNICSIYS*RRAKATAPVPRAA 660
+A GG DN C I+ R K+ +P A
Sbjct: 438 LASGGEDNQCRIWDLRMRKSLYIIPAHA 465
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
+ RGH + + + SD +++AS D + VWDS TT+
Sbjct: 341 KEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
+Q + + H + + + DS L S SQDGK+ +W T C R AH
Sbjct: 251 LQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIR-TGVCIRRFDAH 304
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 349 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNRCTRSR 525
N+EP G + + L+GH + + W +LV +AS D + +WD+ + +CT+
Sbjct: 48 NIEPHGHSKAKDLE-LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDAR-SGKCTQQV 105
Query: 526 CAHXXXXXXXXXXXXSYVACGGLDNICSIYS*RRAK 633
++VA G D+ +I R+ K
Sbjct: 106 ELSGENINITYKPDGTHVAVGNRDDELTILDVRKFK 141
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
R +GH K++++ W S+ L S S D +W+
Sbjct: 14 REYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWN 48
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHT 501
RT GH + AM W SDS L++ +D + I W++ T
Sbjct: 246 RTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKT 284
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 386 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 426 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 382 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
T R GH + ++ + +D+R +VSAS+D + +W++
Sbjct: 97 TTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 385 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
+R L GH + + SD + +S S DG+L +WD T TR H
Sbjct: 56 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL-ATGETTRRFVGH 104
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXX 567
R GH + A+ + L S S D L VWD+ C ++ H
Sbjct: 43 RAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKG-CIQTYKGHTRGISTIEFSP 101
Query: 568 XS-YVACGGLDNICSIY 615
+V GGLDN+ ++
Sbjct: 102 DGRWVVSGGLDNVVKVW 118
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
I R T GH + A+ + L+SA D K+ +WD + + +C R+ H
Sbjct: 270 IPKRLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGH 325
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 349 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRC 513
NL I+ ++L G + ++Y++ G+D L + +QDG ++ W + C
Sbjct: 211 NLVKAWNIETNADQSLSGPVGQVYSLVVGTDL--LFAGTQDGSILAWRYNAATNC 263
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRS 522
L GH I + S L S S DG L++WD + + +C RS
Sbjct: 183 LEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCN-SGQCVRS 224
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 358 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
P G ++R ++L H AK+ + + S+S D +I+WD
Sbjct: 3308 PRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWD 3352
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 337 QATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+A+S + + R+ +RT R + +GH+ ++ ++ + + +L S +D + +WD
Sbjct: 145 KASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWD 200
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +1
Query: 331 LAQATSNLEPIGRIQ-MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
LA A+S + + ++ + R GH + A+ + L S S D L +WD
Sbjct: 74 LAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKG 133
Query: 508 RCTRSRCAHXXXXXXXXXXXXS-YVACGGLDNICSIY 615
C ++ H +V GGLDN+ ++
Sbjct: 134 -CIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVW 169
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHT 501
H + I A W S +L+SAS DGK+++WD T
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRT 390
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/86 (23%), Positives = 34/86 (39%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXX 570
+L GH + ++ W + + S+S D + WD T C
Sbjct: 267 SLVGHTQCVSSVVW-PEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESS 325
Query: 571 SYVACGGLDNICSIYS*RRAKATAPV 648
+ +A GG D I ++ R+ +APV
Sbjct: 326 ALIAAGGSDPILRVWDPRKPGTSAPV 351
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHT 501
H + I A W S +L+SAS DGK+++WD T
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRT 390
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/86 (23%), Positives = 34/86 (39%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXX 570
+L GH + ++ W + + S+S D + WD T C
Sbjct: 267 SLVGHTQCVSSVVW-PEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESS 325
Query: 571 SYVACGGLDNICSIYS*RRAKATAPV 648
+ +A GG D I ++ R+ +APV
Sbjct: 326 ALIAAGGSDPILRVWDPRKPGTSAPV 351
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTNRCTRS 522
TL GH ++ + W L S S DG++I+W N+ T++
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQA 96
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+ H I ++ + SD R L+S S DG L VWD
Sbjct: 370 KAHTDDITSVKFSSDGRILLSRSFDGSLKVWD 401
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 364 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWD 492
G + +R + +GH+ + W ++ V ++S+DG L +WD
Sbjct: 264 GDMYIRDLKNTKGHICGLTCGEWHPRTKETVLTSSEDGSLRIWD 307
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +1
Query: 382 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
TRR + GH + ++ + +D+R +VSAS+D + +W++
Sbjct: 98 TRRFV-GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 385 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
+R + GH + + SD + +S S DG+L +WD T TR H
Sbjct: 56 QRRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDL-ATGESTRRFVGH 104
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
R R RGH ++ A+ + S +VSA D L VWD
Sbjct: 93 RVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWD 492
+L GH A Y M + R +SA DGK IVWD
Sbjct: 581 SLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 615
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 367 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
RI+ T GH ++ + W + L S D + +WD
Sbjct: 205 RIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 373 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
++ + L GH + A+ W S+ L+S S D ++ +W+
Sbjct: 39 RLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWN 78
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Frame = +1
Query: 283 LKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIY--AMHWGSDSRNLV 456
++N + +A +S TS +P G I M+ R ++ A G +
Sbjct: 579 MENTVDNASSGTASSSQNDRTS-YQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIA 637
Query: 457 SASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXSYVACGGLDNICSIYS 618
S S DG+ +W+ T S VA G+DN I+S
Sbjct: 638 SGSDDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWS 691
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+T TL GHL +A W D + +QD VWD
Sbjct: 310 KTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWD 347
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTNRCTR 519
TL GH ++ + W L S S DG++I+W N+ T+
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQ 95
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 504
L GH + Y + W S L+S SQD ++ +WD T
Sbjct: 165 LMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSAT 202
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHT 501
H + + W + RN L SAS D K+ VWD T
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVWDVAT 297
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHT 501
H + + W + RN L SAS D K+ VWD T
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVAT 265
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXXXS 573
LRGH ++ + + + LVS+S+D L VWD T + H
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEER 203
Query: 574 YVACGGLDNICSIYS 618
YV G D Y+
Sbjct: 204 YVVTGSADQELRFYA 218
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 340 ATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 498
A ++++ + +T T GH A + + D+ LV+ S+D +++W H
Sbjct: 2646 ADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIH 2698
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
+T TL GHL +A W D + +QD VWD
Sbjct: 308 KTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWD 345
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 358 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
P G ++R + L H AK+ + + S S D +I+WD
Sbjct: 3364 PRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWD 3408
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWD 492
GH A + + W D ++ S+++DG L +WD
Sbjct: 373 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 404
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
L+GH + + + + +S +++AS+DG + VW+
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN 317
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
GH + + + D LVS SQDG + VW
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH-XXXXXXXXXXX 567
TL GH+ ++ + + + SA D ++ WD N+ RS H
Sbjct: 207 TLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGHLHGVYCLALHPT 265
Query: 568 XSYVACGGLDNICSIYS*R 624
V GG D++C ++ R
Sbjct: 266 LDVVLTGGRDSVCRVWDIR 284
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCT 516
+ + L GH KI + + LVS+ DGKL +W + + + T
Sbjct: 502 KVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLT 547
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 400 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWD 492
GH A + + W D ++ S+++DG L +WD
Sbjct: 384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 415
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 382 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
TRR + GH + ++ + D+R +VSAS+D + +W++
Sbjct: 98 TRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
+T TL+GHL +A W + + +QD +WD+
Sbjct: 310 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDT 348
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 495
+T TL+GHL +A W + + +QD +WD+
Sbjct: 304 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDT 342
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 367 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
RI+ T GH ++ + W + L S D + +WD
Sbjct: 223 RIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 313 AACDTSLAQA--TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIV 486
AACD + SNLE ++ R+L + ++ W D++ + S S DG +
Sbjct: 170 AACDDGCVRLYRISNLE-----KLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRC 224
Query: 487 WDSHTTNRCTR 519
WD+ + + R
Sbjct: 225 WDATSCHEVYR 235
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSR 525
+GH +YA+ LVS + L VWD T ++ + R
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLR 252
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 397 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSR 525
+GH +YA+ LVS + L VWD T ++ + R
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLR 252
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 507
TL GH + + + DS +VSAS D L +W+ + TN
Sbjct: 889 TLAGHEKAVSYVKF-MDSETIVSASTDNSLKLWNLNKTN 926
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
+ GH KI+ + + D + L + +DG + +W
Sbjct: 194 INGHKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
RT LRGH + + S+ + L ++ D ++IVW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVW 426
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
TL H I+++ W L++ S D +VWD
Sbjct: 360 TLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWD 393
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 436 SDSRNLVSASQDGKLIVWDSHTTNRCTRSR 525
S+ + LVSAS+D + VW+ + +R RS+
Sbjct: 654 SNGKFLVSASEDSNVYVWNYDSDSRAGRSK 683
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAHXXXXXXXXXXX 567
+T GH + + + +D VS DG L +W+ + T+ C + H
Sbjct: 577 KTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVN-TSECIATYDQHEDKVWALAVGK 635
Query: 568 XS-YVACGGLDNICSIY 615
+ +A GG D + +++
Sbjct: 636 KTEMIATGGGDAVINLW 652
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
LRGH + + + L + S DG+L +WD+ +R S AH
Sbjct: 13 LRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDT-IQHRAVSSAWAH 58
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 HERADSLRQ-EAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQ-MRTRRTLRGHLAKI 417
H AD +R + R +A S A + +P +Q M+ + LRGH +
Sbjct: 251 HMHADQVRGLSLREIGGGFRKHHRAPSILSACHAIA--KPSTMVQKMQNIKKLRGHRNAV 308
Query: 418 YAMHWGSDSRNLVSASQDGKLIVWDSHT 501
Y + R +++ S D + +W T
Sbjct: 309 YCAIFDRSGRYVITGSDDRLVKIWSMET 336
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTR 519
+ + T +GH ++ + S + +++ S+DG +WD T +C +
Sbjct: 192 KIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDC-KTGKCVK 237
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 379 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
RT LRGH + + S+ + L ++ D +++VW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVW 426
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 492
T +GH + + + D R +VS +D + VWD
Sbjct: 231 TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWD 264
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 489
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 209 INTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVW 249
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 388 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTR 519
R+L + ++ W +D++ + S S DG + WD++ + R
Sbjct: 192 RSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYR 235
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 394 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 489
++ H I AM + +D + L S+ +DG + VW
Sbjct: 217 IKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH 534
+L GH ++ + S L S S DG L VWD C +C H
Sbjct: 126 SLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWD------CNSGQCVH 167
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 391 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNRCTRSRCAH-XXXXXXXXXXX 567
TL GH+ ++ + + + SA D ++ WD N+ RS H
Sbjct: 213 TLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGHLSGVYCLALHPT 271
Query: 568 XSYVACGGLDNICSIYS*R 624
+ GG D++C ++ R
Sbjct: 272 LDVLLTGGRDSVCRVWDIR 290
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 489
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 190 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 230
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 370 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 489
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 225 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 265
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 412 KIYAMHWGSDSRNLVSASQDGKLIVWDSHT 501
KI WG ++ +VS +D + +WD+ T
Sbjct: 177 KINRAVWGPLNQTIVSGGEDAAIRIWDAET 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,403
Number of Sequences: 28952
Number of extensions: 276891
Number of successful extensions: 1164
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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