Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0731
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               165   2e-41
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 53   1e-07
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         28   6.1  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  
SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         27   8.0  
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  165 bits (402), Expect = 2e-41
 Identities = 78/84 (92%), Positives = 81/84 (96%)
 Frame = +2

Query: 2   LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
           LTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRIMDPNI+G EHY +ARGVQK
Sbjct: 287 LTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGTEHYEIARGVQK 346

Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
           ILQDYKSLQDIIAILGMDELSE+D
Sbjct: 347 ILQDYKSLQDIIAILGMDELSEDD 370



 Score =  127 bits (306), Expect = 7e-30
 Identities = 60/75 (80%), Positives = 67/75 (89%)
 Frame = +1

Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
           +LTVARARKIQ+FLSQPF  AEVFTGH GKLVPL+ETI GF+KIL G+ DHLPEVAFYM+
Sbjct: 371 KLTVARARKIQKFLSQPFVTAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVAFYMI 430

Query: 433 GPIEEVVAKADTLAK 477
           GPIEE VAKAD LA+
Sbjct: 431 GPIEEAVAKADRLAE 445


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   LTDPAPATTFAHLDATTVLSRAIAEL 79
           LTDPAPATTFAHLDATTVLSR IAEL
Sbjct: 212 LTDPAPATTFAHLDATTVLSRKIAEL 237


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +2

Query: 2   LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
           +T P P  T    +    + R +    IYP ++ L S SR+M   I       +H +V+ 
Sbjct: 279 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 338

Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
            +       K +Q + A++G + L+ ED
Sbjct: 339 QLYANYAIGKDVQAMKAVVGEEALTSED 366


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = +2

Query: 83   IYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDS*Q 262
            + P  +  +  S + DPNII A +  +A+   + L++ K+L ++  IL  + +S+ DS  
Sbjct: 974  VAPPQNAEEQQSGMFDPNIIQAAYNALAKKAAEELEN-KNLSNVWTIL--ETMSQVDSSP 1030

Query: 263  WHVHVK 280
             HV +K
Sbjct: 1031 HHVFLK 1036


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 88  VDTQFSNGSGEYSGSIQVSKSGSWSRICQ 2
           ++ + S+G+    G ++V  +G W  ICQ
Sbjct: 789 IEVRLSDGNSPAEGRVEVFHTGFWGTICQ 817


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 80  GIYPAVDPLDSTSRIMDPNIIGAEHY 157
           G YPA DP     R   PNI  A HY
Sbjct: 212 GDYPAWDPTTDYQRNSRPNIANAFHY 237


>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 70  NGSGEYSGSIQVSKSGSWSRIC 5
           NG  +Y G ++V  +G W  IC
Sbjct: 228 NGPTQYEGRVEVYHAGHWGTIC 249


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 79  QFSNGSGEYSGSIQVSKSGSWSRIC 5
           + + G G Y G ++V  +G+W  +C
Sbjct: 508 RLAGGRGPYEGRVEVYHNGAWGVVC 532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,608
Number of Sequences: 59808
Number of extensions: 351078
Number of successful extensions: 1141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)