Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0731
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 154 4e-38
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 154 4e-38
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 154 4e-38
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 33 0.100
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 33 0.100
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 33 0.100
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 33 0.100
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 33 0.100
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 31 0.40
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ... 29 2.1
At3g11560.3 68416.m01412 expressed protein 28 3.7
At3g11560.2 68416.m01411 expressed protein 28 3.7
At3g11560.1 68416.m01410 expressed protein 28 3.7
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 28 3.7
At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / A... 28 3.7
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote... 27 6.5
At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr... 27 6.5
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 6.5
At5g67130.1 68418.m08463 expressed protein 27 8.7
At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein c... 27 8.7
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 27 8.7
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei... 27 8.7
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei... 27 8.7
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 154 bits (373), Expect = 4e-38
Identities = 71/84 (84%), Positives = 80/84 (95%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
LTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK
Sbjct: 394 LTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQK 453
Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
+LQ+YK+LQDIIAILGMDELSE+D
Sbjct: 454 VLQNYKNLQDIIAILGMDELSEDD 477
Score = 101 bits (243), Expect = 3e-22
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +1
Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
+LTVARARKIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMV
Sbjct: 478 KLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMV 537
Query: 433 GPIEEVVAKADTLAKNA 483
G I+EVVAKA+ +AK +
Sbjct: 538 GGIDEVVAKAEKIAKES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 154 bits (373), Expect = 4e-38
Identities = 71/84 (84%), Positives = 80/84 (95%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
LTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK
Sbjct: 397 LTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQK 456
Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
+LQ+YK+LQDIIAILGMDELSE+D
Sbjct: 457 VLQNYKNLQDIIAILGMDELSEDD 480
Score = 101 bits (243), Expect = 3e-22
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +1
Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
+LTVARARKIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMV
Sbjct: 481 KLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMV 540
Query: 433 GPIEEVVAKADTLAKNA 483
G I+EVVAKA+ +AK +
Sbjct: 541 GGIDEVVAKAEKIAKES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 154 bits (373), Expect = 4e-38
Identities = 71/84 (84%), Positives = 80/84 (95%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQK 181
LTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK
Sbjct: 394 LTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQK 453
Query: 182 ILQDYKSLQDIIAILGMDELSEED 253
+LQ+YK+LQDIIAILGMDELSE+D
Sbjct: 454 VLQNYKNLQDIIAILGMDELSEDD 477
Score = 101 bits (243), Expect = 3e-22
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +1
Query: 253 QLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMV 432
+LTVARARKIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMV
Sbjct: 478 KLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMV 537
Query: 433 GPIEEVVAKADTLAKNA 483
G I+EVVAKA+ +AK +
Sbjct: 538 GGIDEVVAKAEKIAKES 554
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.5 bits (73), Expect = 0.100
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
+T P P T + + R + IYP ++ L S SR+M I +H +V+
Sbjct: 338 ITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN 397
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G + LS ED
Sbjct: 398 QLYANYAIGKDVQAMKAVVGEEALSSED 425
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.5 bits (73), Expect = 0.100
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
+T P P T + + R + IYP ++ L S SR+M I +H +V+
Sbjct: 338 ITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN 397
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G + LS ED
Sbjct: 398 QLYANYAIGKDVQAMKAVVGEEALSSED 425
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 33.5 bits (73), Expect = 0.100
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -1
Query: 274 VHVP-LSTVFFRQLVHTQNSNNVLQGFVVLKNFLNST 167
+H P L+ +FR ++H ++ +NV++ F + KN L++T
Sbjct: 451 MHAPNLANRYFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 33.5 bits (73), Expect = 0.100
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
+T P P T + + R + IYP ++ L S SR+M I +H +V+
Sbjct: 337 ITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 396
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G + LS ED
Sbjct: 397 QLYANYAIGKDVQAMKAVVGEEALSSED 424
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 33.5 bits (73), Expect = 0.100
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVAR 169
+T P P T + + R + IYP ++ L S SR+M I +H +V+
Sbjct: 336 ITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 395
Query: 170 GVQKILQDYKSLQDIIAILGMDELSEED 253
+ K +Q + A++G + LS ED
Sbjct: 396 QLYANYAIGKDVQAMKAVVGEEALSSED 423
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 232 HTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHDTGS 113
HTQ+SNN+ + + N +NS+ ++ L + I H GS
Sbjct: 384 HTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGS 423
>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 278 LRARATVNCLLQTTRPYPK*Q*CPAGICSPEEFSELHVQHC 156
LR +T T P+P P GICS + LHV C
Sbjct: 478 LRCASTTEPFFHKTHPHPLFYTSPQGICSICKKDHLHVLRC 518
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 380 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 285
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 380 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 285
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 380 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 285
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (CKI1)
identical to GB:D87545
Length = 1122
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 41 DATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIA 220
+A +++ + + +VD L MD + + Y R ++K+ + Y IIA
Sbjct: 1021 EALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIA 1080
Query: 221 ILGMDELSEE 250
+ G D SEE
Sbjct: 1081 VSGHDPGSEE 1090
>At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / ACP
/ NADH-ubiquinone oxidoreductase 9.6 kDa subunit
identical to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; identical to cDNA acyl carrier protein
precursor GI:468265
Length = 122
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 35 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYK 199
HL V+ R + + +P VDP T + N +G + + V I +++K
Sbjct: 40 HLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFK 94
>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1135
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 268 VPLSTVFFRQLVHTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNI 134
VPL RQL SNN LQG++ L + ++ +SSN++
Sbjct: 507 VPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDL 551
>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, INTERPRO:IPR001611; contains
serine/threonine protein kinases active-site signature,
Prosite:PS00108
Length = 838
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 310 LGKVVRGTSEFYVHVPLSTVFFRQLVHTQNSNNVLQGFVVLKNFLNST 167
LGK V GT E +++P S + LV T S ++ +VL+ N+T
Sbjct: 138 LGKYVNGTWEEIIYIPKSNMLDVCLVKTGPSTPLISS-LVLRPLANAT 184
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 210 TLLLFWVWTSCLKK 251
+LLLFW W CLK+
Sbjct: 303 SLLLFWYWEDCLKQ 316
>At5g67130.1 68418.m08463 expressed protein
Length = 426
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 103 RIHSWVDTQFSNGSGEYSGSIQVSKS 26
R S T SN G YSGS+Q S+S
Sbjct: 376 RTPSMDSTAGSNSGGSYSGSVQFSRS 401
>At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 130
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 202 PAGHYCYFGY---GRVV*RRQLTVARARKIQRF 291
P H C F Y GR+ QL + RA K+QRF
Sbjct: 98 PEEHSCPFDYKQSGRLALATQLPLIRADKLQRF 130
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -1
Query: 265 PLSTVFFRQLVHTQNSNNVLQGFVVLKN-FLNSTCNIVVLSSNNIGVHDTGS*VKRIH-S 92
PLS + LVH S N +G + +N F S ++ + NN+ S K ++
Sbjct: 84 PLSLLMIPSLVHIDLSQNHFEGPIDFRNTFSLSRLRVLYVGFNNLDGLIPESISKLVNLE 143
Query: 91 WVDTQFSNGSGEYSGSI 41
++D +N G+ SI
Sbjct: 144 YLDVSHNNFGGQVPRSI 160
>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 326
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +1
Query: 319 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 465
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 230 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 282
>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 299
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +1
Query: 319 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 465
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 203 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,824
Number of Sequences: 28952
Number of extensions: 251429
Number of successful extensions: 625
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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