Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0729
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28317| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)                      30   1.7  
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_7888| Best HMM Match : UPF0203 (HMM E-Value=8.6)                    29   5.1  
SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08)                28   6.8  

>SB_28317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 620 IRKGRKGKKILFQF---IVYLEL--VKLNNAPFSSPF*HFEYRWTVFPGTY 483
           +R   KGK+ LFQ    +  LEL  +++N       F   E  W +FP TY
Sbjct: 9   VRAKYKGKRTLFQLEFELFQLELREIRVNLGQVDERFELSELEWAIFPATY 59


>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
          Length = 251

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 185 IAWRIVGNNMIWLIAWSLWVHGVLPNAP 268
           I W+ VG+N I+    SLWVH    N P
Sbjct: 90  ILWKGVGSNSIFCSGCSLWVHKKCSNIP 117


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 346 AERCRIQFWPRVCECISLR---VLLTKFDTHFSFSQATRSSASQFYNLLYVPGKTVHLYS 516
           AE C   F  RV + I++    + L    TH++   ++R      +NLL    K  H Y+
Sbjct: 180 AEICFKNFGDRVKKWITINEPAIELLFMKTHWAPPASSREQYLAGHNLLLAHAKVYHTYN 239

Query: 517 KC*KGEEKGAL 549
              K  +KG +
Sbjct: 240 NTYKATQKGKI 250


>SB_7888| Best HMM Match : UPF0203 (HMM E-Value=8.6)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 266 EHSVKLREPRDSKRSARSYYCRQSSMQLKDFN*QRADFVWSAFNSIFGFDGSFQSVPNTM 87
           E  +K   P  + R+ +    R +  + +D   +R +     F S +G D SF++ PN +
Sbjct: 98  EKIIKSNPPTMASRATKKVLRRSNEEREED---KRQEMAMREFASEYGRDTSFENSPNCI 154

Query: 86  LMTCYGLGH 60
           L    G+ H
Sbjct: 155 LPDVCGVVH 163


>SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08)
          Length = 389

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = +1

Query: 283 FYGITPIFFHRSATTVYMHLSAERCRIQFWPRVCECISLRVLLTKFDTHFSFSQATRSSA 462
           F  IT ++      T  +  + E       P + EC        +F+ +  F+Q   + A
Sbjct: 53  FSNITEVYDFAVMFTGLLDAALETAEEGKPPNIGECFEEMAEAAEFEVYEQFAQEQTALA 112

Query: 463 SQFYNLLYVPGKTVHLYSK 519
           S+ Y  L + GK   L ++
Sbjct: 113 SKLYRHLGIGGKLYELLAR 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436,578
Number of Sequences: 59808
Number of extensions: 499104
Number of successful extensions: 1104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)