Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0727
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)      71   1e-12
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          32   0.61 
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)                    31   1.4  
SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   7.5  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 28   7.5  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   7.5  
SB_23929| Best HMM Match : PT (HMM E-Value=0.21)                       28   7.5  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   7.5  
SB_43722| Best HMM Match : TPR_4 (HMM E-Value=0.69)                    28   7.5  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   9.9  
SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)                      28   9.9  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   9.9  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 30/64 (46%), Positives = 45/64 (70%)
 Frame = +2

Query: 512 FMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIK 691
           FM GG++E FE++  +L  MG    H G  G+GQ AK+ NNML+ ++ + TAE MN+GI+
Sbjct: 109 FMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNLGIR 168

Query: 692 MGLE 703
           +GL+
Sbjct: 169 LGLD 172



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 372 GSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 509
           G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  TL
Sbjct: 62  GTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAGTL 107



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 694 GTRTEVLLDVLNNSSARSWSTEVTVQFPGLV 786
           G   E++  ++N+SS R WS+EV    PG++
Sbjct: 170 GLDAEMIAKIINSSSGRCWSSEVYNPVPGVL 200


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 348 GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGG 482
           G+++  K+GS+ ID +T D N   ++  +A  KG+   +AP++GG
Sbjct: 85  GMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHAVEAPLTGG 129


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 115 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPATPLLQPLME 282
           K +A +GLG +G  +A  +   G    GYDP     +AA  N     T  + PL +
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIWPLAD 64


>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 503

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 787 APVRGTGQSPRSTRSEPMSCSARPTELRFESHFNAHVHALS 665
           AP+     SP  T S P SC A P+    ++HF +++HA++
Sbjct: 48  APMSSPLPSPTGTISVPNSCPASPSNR--DTHFESNLHAVA 86


>SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 146 WEGSWLRTWLKRVSQFA 196
           W+G+WL++W K  SQ+A
Sbjct: 281 WKGTWLKSWEKLPSQYA 297


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 530 YDLRP*RQGSVLSTHDSSRYRCICESQPFL*GYREDLFGNIRIYCTRIDQKRSFFRMSH 354
           Y+ R  RQ   LST         C+    L   R  +F  IR++ ++ID+KR   + +H
Sbjct: 47  YNYRRERQECELSTEGLLAQ---CDKDKVLHFERGAIFNQIRLFVSKIDEKRGAIKETH 102


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 488 GCSERYPAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQV 616
           GC ERY  +       DF+ SL  + V+GA    CG   S ++
Sbjct: 161 GCGERYIDYA-----HDFDASLMAMAVLGALACSCGDTWSSEI 198


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 297 KRPRRLHQRLQQWSCWRHSVLGRCVQCIFGRIVAANCETLFNQV 166
           KRP R  +RLQ+ S WRHS         F  +V  + +T  +Q+
Sbjct: 123 KRPTR--KRLQEISVWRHSQHHHTAHVEFDNVVDKDFKTAVDQL 164


>SB_23929| Best HMM Match : PT (HMM E-Value=0.21)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 172 PSSQP*TLPCFRGRGKPHSCRC*NYTPVWRLCTNTE 65
           P SQP + P  R   +PHS       P WRL T+TE
Sbjct: 26  PVSQPVSQPVSRATPRPHS------APKWRLNTSTE 55


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 342 CPGTRRARLYCWSIWKRPRRLHQRLQQWSCWRHSVLGR-CVQCIFGRIVAANCETLF 175
           C   R   + C S+W      HQRL+  S    S  GR  +  +  R+  +N   +F
Sbjct: 605 CTSARETVVACNSLWSSHLTFHQRLRDPSGRTGSSRGRKVIMSVLERLAVSNRRNMF 661


>SB_43722| Best HMM Match : TPR_4 (HMM E-Value=0.69)
          Length = 199

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 354 QRHLCPGTRRARLYCWSIWKR--PRRLHQRLQQWSCWRHSVLGRCVQCIFGRIVAANCET 181
           Q   C  T  A+L C  +  R  P  L  RL       HS+  RC + + GR++  + E 
Sbjct: 61  QSRRCKTTASAKLACLQVDSRGSPLTLLLRLDYIPA-PHSIHQRCYKLMPGRVLRLDAEA 119

Query: 180 LFNQVRSHEP 151
           +     +H P
Sbjct: 120 VAAGAAAHRP 129


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 708  FGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQ--WNCLAPITLRRGRDLSKS 535
            F    +L+P  ++  + IPVMPI +L V +  C + + P    + L  I    G  L  S
Sbjct: 889  FSVGAVLLPSVLNPWLIIPVMPIVVLFVIIG-CMDELLPDVLLDALQLILFSVGAVLLPS 947

Query: 534  SLRP 523
             L P
Sbjct: 948  VLNP 951


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 504 TLPSWPEVVKKTSKGPFLSSK*WELSSS 587
           T PSWP     TS  P+L++K  +LS S
Sbjct: 179 TNPSWPVFEDSTSTSPYLTTKVSKLSHS 206


>SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)
          Length = 1013

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 NRSECSQTDLPYSPRERAGIHRC 466
           N SEC + + P   RERA + RC
Sbjct: 46  NASECMERNGPKGKRERASVDRC 68


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 100 SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 246
           S    ++   L +G+  G  A  LVK GFT +   DPS+ +   A K  +
Sbjct: 61  SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 NRSECSQTDLPYSPRERAGIHRC 466
           N SEC + + P   RERA + RC
Sbjct: 206 NASECMERNGPKGKRERASVDRC 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,137,907
Number of Sequences: 59808
Number of extensions: 656362
Number of successful extensions: 2008
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)