Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0727
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi... 54 8e-08
At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase, put... 54 1e-07
At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase NAD-bi... 50 2e-06
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 46 2e-05
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 45 5e-05
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 44 1e-04
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 42 6e-04
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar... 36 0.031
At3g18240.2 68416.m02321 expressed protein 31 1.2
At3g18240.1 68416.m02320 expressed protein 31 1.2
At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS) ... 30 1.5
At1g76320.1 68414.m08866 far-red impaired responsive protein, pu... 30 1.5
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 29 3.5
At4g21460.1 68417.m03104 expressed protein 29 3.5
At1g15710.1 68414.m01885 prephenate dehydrogenase family protein... 29 3.5
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 29 4.6
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family... 28 6.1
At2g36400.1 68415.m04467 expressed protein nearly identical to t... 28 8.1
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 28 8.1
>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 343
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +2
Query: 512 FMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIK 691
F+ G K +E++ P L +MG +F+ G++G+G KL NM+MG + AE + + K
Sbjct: 185 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGILLSQK 244
Query: 692 MGLEP 706
+GL+P
Sbjct: 245 VGLDP 249
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 297 SILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVS 476
++L + +DV GK+G + G +D ST+D I + G F +APVS
Sbjct: 113 AMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVS 172
Query: 477 GGVMGAQNATL 509
G A++ L
Sbjct: 173 GSKKPAEDGQL 183
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 118 NVAFLGLGNMGGFMAANLVKKGFTVRGYDPSK 213
++ FLG+G MG MA NL+K G V ++ +K
Sbjct: 53 SIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTK 84
>At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase,
putative similar to SP|P29266 3-hydroxyisobutyrate
dehydrogenase, mitochondrial precursor (EC 1.1.1.31)
{Rattus norvegicus}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 347
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 512 FMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIK 691
FM GG ++ + + P+L+ MG +CG G+G AK+ NN+ M ++ + T+E + +G
Sbjct: 183 FMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQS 242
Query: 692 MGL 700
+G+
Sbjct: 243 LGI 245
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +1
Query: 73 LYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 249
L+ + + +SN +NV F+GLGNMG M NL++ G+ V +D ++D + + GV+
Sbjct: 24 LHRFSSSSQNSNQFQNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVS 82
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Frame = +3
Query: 297 SILTSNKVVLDVYLGKDGVVAHAK--KGSLLIDSSTIDPNVPKQIFPIALEKGLG----- 455
++L S+ V+DVY G +G++ + +L IDSSTIDP ++I L
Sbjct: 99 TMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDN 158
Query: 456 -----FTDAPVSGGVMGAQNATL 509
DAPVSGGV+ A+ TL
Sbjct: 159 WEKPVMLDAPVSGGVLAAEAGTL 181
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 694 GTRTEVLLDVLNNSSARSWSTEVTVQFPGLV 786
G L +VLN SS R WS++ PG++
Sbjct: 244 GISASTLTEVLNTSSGRCWSSDAYNPVPGVM 274
>At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase;
supporting cDNA gi|15375067|gb|AY044183.1|
Length = 289
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +2
Query: 515 MAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKM 694
+A G K FE S+P V+G + F+ GQ+G+G KL NM+MG A +E + + K
Sbjct: 135 LAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS 194
Query: 695 GL 700
GL
Sbjct: 195 GL 196
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 297 SILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVS 476
++L+ L V K GV+ +G ID ST+D +I KG F + PVS
Sbjct: 62 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 121
Query: 477 GGVMGAQNATL 509
G A++ L
Sbjct: 122 GSKKPAEDGQL 132
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 121 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 249
V FLGLG MG M+ NL+K GF V ++ + + ++G +
Sbjct: 3 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGAS 45
>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein contains Pfam
profile: PF03446 NAD binding domain of
6-phosphogluconate
Length = 299
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/71 (32%), Positives = 40/71 (56%)
Frame = +3
Query: 297 SILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVS 476
+I+ ++ V + LG DGV++ K G + +D ++ P + ++I+ A + DAPVS
Sbjct: 75 TIVGNSNDVRSLLLGDDGVLSGLKPGGVTVDMTSSKPGLAREIYAEARRRDCWAVDAPVS 134
Query: 477 GGVMGAQNATL 509
GG GA+ L
Sbjct: 135 GGDAGAREGKL 145
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +2
Query: 488 GCSERYPAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATA 667
G E AGG E E P++K MG +F G GSGQ K+ N + +G + A
Sbjct: 139 GAREGKLTIFAGGDSEIVEWLAPVMKTMGIVRF-MGGAGSGQSCKIGNQICVGSNMIGLA 197
Query: 668 ECMNMGIKMGLEP 706
E + K GL+P
Sbjct: 198 EGIVFAEKAGLDP 210
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 342 KDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 509
K G ++ ++G +L+D +T +P++ ++I A K DAPVSGG +GA+N L
Sbjct: 115 KSGALSGLRQGGVLVDMTTSEPSLAEEIAKAASFKNCFSIDAPVSGGDLGAKNGKL 170
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +2
Query: 509 AFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGI 688
+ AGG + +R PL +MG F G G GQ AKL N + + T + E +
Sbjct: 171 SIFAGGDETTVKRLDPLFSLMGKVNF-MGTSGKGQFAKLANQITIASTMLGLVEGLIYAH 229
Query: 689 KMGLEPK 709
K GL+ K
Sbjct: 230 KAGLDVK 236
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 321 VLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQN 500
V + LG DGV++ G + +D ++ P + ++I A + DAPVSGG GA+
Sbjct: 104 VRSLLLGDDGVLSGLTPGGVTVDMTSSKPGLAREIHAEARRRNCWAVDAPVSGGDAGARE 163
Query: 501 ATL 509
TL
Sbjct: 164 GTL 166
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 488 GCSERYPAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATA 667
G E AGG E E P++K +G + G+ GSGQ K+ N + + A
Sbjct: 160 GAREGTLGIFAGGDSEIVEWLSPVMKNIGTVTY-MGEAGSGQSCKIGNQIAGASNLVGLA 218
Query: 668 ECMNMGIKMGLE 703
E + K GL+
Sbjct: 219 EGIVFAEKAGLD 230
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
family protein low similarity to KbaY
(tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
GI:8895753; contains Pfam profile PF01116:
Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 515 MAGGRKEDFERSLPLLKVMGAKQFHC-GQIGSGQVAKLTNNMLMGITGMATAECMNMGIK 691
+A GR + R+ P L M + G+IG+G K+ N +L GI +A E +++G +
Sbjct: 139 IASGRSDSITRAQPYLTAMCQNLYTFEGEIGAGSKVKMVNELLEGIHLVAAVEAISLGSQ 198
Query: 692 MGLEP 706
G+ P
Sbjct: 199 AGVHP 203
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 121 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDAL 222
+ F+GLG MG MAA+L+K F+V GYD K L
Sbjct: 324 IGFIGLGAMGFGMAAHLLKSNFSVCGYDVYKPTL 357
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 515 MAGGRKEDFERSLPLLKVMGAKQFHC-GQIGSGQVAKLTNNMLMGITGMATAECMNMGIK 691
MA G E + + +L + K + G G+G K+ N +L G+ + AE M G +
Sbjct: 458 MASGTDEALKSAGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGAR 517
Query: 692 MGLEPK 709
+GL +
Sbjct: 518 LGLNTR 523
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 300 ILTSNKVVL-DVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKG--LGFTDAP 470
I+ +N+V DV G G V G+ ++ +ST+ P Q+ +G L DAP
Sbjct: 383 IMVTNEVQAEDVLYGHLGAVEAIPSGATVVLASTVSPAFVSQLERRLENEGKDLKLVDAP 442
Query: 471 VSGGVMGA 494
VSGGV A
Sbjct: 443 VSGGVKRA 450
>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
arogenate dehydrogenase GI:16903098 from [Arabidopsis
thaliana]; contains Pfam profile: PF02153: prephenate
dehydrogenase
Length = 640
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 121 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 249
+ +G GN G F+ +VK+G TV Y S D + AAK GV+
Sbjct: 367 IGIVGFGNFGQFLGKTMVKQGHTVLAYSRS-DYTDEAAKLGVS 408
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 121 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPATPL 264
+A +G GN G F+A L+ +G + + S D +AA + GV+ T L
Sbjct: 55 IAIIGFGNYGQFLAETLISQGHILFAHSRS-DHSSAARRLGVSYFTDL 101
>At3g18240.2 68416.m02321 expressed protein
Length = 419
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 311 Q*SRARRVPGQRWRCGSCEKRIASDRFEY---NRSECSQT 421
Q R R + G+R+ G E I S+RFE+ NR +C +T
Sbjct: 328 QAKRLRELVGKRYHSGKDELTITSERFEHREENRKDCLRT 367
>At3g18240.1 68416.m02320 expressed protein
Length = 419
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 311 Q*SRARRVPGQRWRCGSCEKRIASDRFEY---NRSECSQT 421
Q R R + G+R+ G E I S+RFE+ NR +C +T
Sbjct: 328 QAKRLRELVGKRYHSGKDELTITSERFEHREENRKDCLRT 367
>At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS)
reductase family protein low similarity to SP|P38913 FAD
synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae};
contains Pfam profiles PF01507: Phosphoadenosine
phosphosulfate reductase family, PF00994: Probable
molybdopterin binding domain
Length = 497
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 672 HSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLR 526
H +++P++ ++V AT E + +W CL +T G L + S R
Sbjct: 379 HEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIEYSSR 427
>At1g76320.1 68414.m08866 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 732
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -3
Query: 315 YCWSIWKRPRRLHQRLQQWSCWRHSVLGRCVQCIF 211
+C+ +W +L + L WS W+ + + + +CI+
Sbjct: 296 HCYCLWHVLDQLPRNLDYWSMWQDTFMKKLFKCIY 330
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 332 VPGQRWRCGSCEKRIASDRFEYNRSECS 415
+P +W CG C K++ ++ Y ++CS
Sbjct: 301 LPSGKWSCGVCRKKVDNNCGAYTCNKCS 328
>At4g21460.1 68417.m03104 expressed protein
Length = 415
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 305 DQQ*SRARRVPGQRWRCGSCEKRIASDRFEY---NRSECSQT 421
+ Q R R + G+R+ G E I +RFE+ NR +C +T
Sbjct: 322 NHQAKRLRELVGKRYHSGKDELTITCERFEHREENRKDCLRT 363
>At1g15710.1 68414.m01885 prephenate dehydrogenase family protein
contains Pfam profile: PF02153 prephenate dehydrogenase
Length = 358
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 79 TAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPS--KDALNA 228
T + Y ++ +A LG GN G F++ L++ G + + S DA N+
Sbjct: 47 TQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANS 98
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 263 CCSR*WSRRGRFHIDQQ*SRARRVPGQRWRCGSCEKRIASDRFE 394
C S +R HID+ R + G ++C SC+K R++
Sbjct: 300 CASLPRRKRSILHIDKLDLRVKNKAGNHYKCRSCQKLFDGFRYK 343
>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 932
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 356 GSCEKRIASDRFEYNRSECSQTDLP 430
G C+ R+A D Y R C+Q+D P
Sbjct: 630 GRCKLRMAGDLHHYMRHSCTQSDGP 654
>At2g36400.1 68415.m04467 expressed protein nearly identical to
transcription activator GRL3 [Arabidopsis thaliana]
GI:21539884 (unpublished); supporting cDNA
gi|21539883|gb|AY102636.1|
Length = 398
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 290 GRFHIDQQ*SRARRVPGQRWRC 355
GR +D + R RR G++WRC
Sbjct: 139 GRAAMDPEPGRCRRTDGKKWRC 160
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 332 VPGQRWRCGSCEKRIASDRFEYNRSEC 412
+P +W CG C + I SD Y+ + C
Sbjct: 288 LPSGKWCCGICRREIDSDYGAYSCNVC 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,547,464
Number of Sequences: 28952
Number of extensions: 452948
Number of successful extensions: 1363
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -