Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0726
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15400.1 68418.m01802 U-box domain-containing protein contain...    30   0.77 
At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 fam...    29   1.4  
At1g77950.1 68414.m09084 MADS-box family protein similar to MADS...    28   3.1  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   4.1  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   4.1  
At3g14520.1 68416.m01840 terpene synthase/cyclase family protein...    27   4.1  

>At5g15400.1 68418.m01802 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 1038

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 84  ILASSVRNASSGMLRNLSAVKLDICDSLMD 173
           I    V  ASSGM  NLSAV L +C+  +D
Sbjct: 354 IQVDPVSCASSGMFVNLSAVMLRLCEPFLD 383


>At5g35730.1 68418.m04274 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mus spretus] GI:6093318;
           contains Pfam profile PF03124: EXS family
          Length = 457

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 HAESWIPDPISKSRMKILIHLFNVLICC 296
           H  + +P PI   R K+++ LF  L CC
Sbjct: 44  HITTMVPSPIFLWRFKVVLFLFWALCCC 71


>At1g77950.1 68414.m09084 MADS-box family protein similar to MADS
           box transcription factor GI:1905943 from [Sorghum
           bicolor]
          Length = 124

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 284 VNLLLNLCESSDLXXKYVGQSRILDILPRYLDM 382
           ++L L +   SD    + GQ+RI D+L RY+++
Sbjct: 41  IDLALLMFSPSDRLCLFSGQTRIEDVLARYINL 73


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   FIEIPENIDEVINQGLVKVAAPLL 79
           F   PE +DE+ N GLV  AA L+
Sbjct: 319 FAPYPEKLDELCNHGLVTQAASLI 342


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   FIEIPENIDEVINQGLVKVAAPLL 79
           F   PE +DE+ N GLV  AA L+
Sbjct: 392 FAPYPEKLDELCNHGLVTQAASLI 415


>At3g14520.1 68416.m01840 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 605

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 174 QDIMTPLTCYFHEHAESWIPDPISKSRMKILIHLFNVL 287
           +DIM   + +   H +SWI   +S +   +L H+ N L
Sbjct: 213 EDIMDEASSFAQNHLDSWIGGNVSGATPHLLKHIQNSL 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,173,622
Number of Sequences: 28952
Number of extensions: 150419
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)