Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0723
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75400.1 68414.m08759 expressed protein 35 0.056
At1g19680.1 68414.m02453 expressed protein 30 1.2
At5g23960.1 68418.m02816 terpene synthase/cyclase family protein... 29 3.7
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At5g57820.1 68418.m07231 hypothetical protein 28 4.9
At5g44860.1 68418.m05499 expressed protein strong similarity to ... 28 4.9
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 28 4.9
At2g39910.1 68415.m04905 expressed protein 28 4.9
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 27 8.5
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 27 8.5
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 34.7 bits (76), Expect = 0.056
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 DSQVCSIC--LCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMVYINFDYLSFYFPNCVLC 429
D QVC C L E + P+ + L+CG +H CL + + + Y P C +C
Sbjct: 277 DQQVCGACSKLLTERSSIATFELPIAAVLACGHVYHAECLETMTTDIEK---YDPACPIC 333
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 DSQVCSIC--LCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMVYINFDYLSFYFPNCVLC 429
D Q C C L E V P+ + L+CG +H CL + + Y P C +C
Sbjct: 269 DQQTCGRCSKLLTERSPVARFDLPIPAVLACGHVYHAACLETM---TNETEKYDPTCPIC 325
>At5g23960.1 68418.m02816 terpene synthase/cyclase family protein
non-consensus TA donor splice site at exon 4
Length = 547
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 146 INWDHDRDIIENISQIFDIEVFPQCERSQNTDI 244
+++ ++DI+E + + FD FPQ R + D+
Sbjct: 71 VSYHFEKDIVEQLDKSFDCLDFPQMVRQEGCDL 103
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 VCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMVYINFDYL-SFYFPNCVLC 429
+CSIC D++ V + L S +CG FH CL F+Y S NC +C
Sbjct: 11 ICSICY----EDLKPVVENLQSISACGHVFHELCLQQW---FEYCPSTNKRNCPIC 59
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 334 LSCGAYFHRTCLHMVYINFDYLSFYFPNCVLCI 432
LSCG +H CL ++ D S P+C+ CI
Sbjct: 128 LSCGHVYHFKCLRGTTLDIDNHS-KDPSCIFCI 159
>At5g44860.1 68418.m05499 expressed protein strong similarity to
unknown protein (gb AAC79135.1)
Length = 321
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 368 YIWFILILIIYHSIFLIVYCVLV 436
++W L++++Y+S+FL+ VL+
Sbjct: 133 FLWVSLMMLVYNSVFLLFLVVLI 155
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 152 WDHDRDIIENISQIFDIEVFPQCERSQNTDIGNEK 256
W+ DRDI E Q+ D+ Q QN +I EK
Sbjct: 867 WEKDRDIKEKKEQLNDLLCLLQLTEVQNREILKEK 901
>At2g39910.1 68415.m04905 expressed protein
Length = 436
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 35 SDDRIWLHVEVTSEGLANNLHLIGQSEFWQNKLQDGLI 148
SDD IW+HV S L +H W K+ + ++
Sbjct: 256 SDDEIWIHVVELSVLLVTKIHPNNPRSPWYEKIMNEML 293
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 373 YVSRSCENMLHKINCCIKAGAHLEHQVIQHTN 278
YVS C + +HK+ C K+G +E ++++TN
Sbjct: 458 YVSYGCLSAIHKLTCLSKSGDIVE--LLKNTN 487
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 256 DSQVCSICLCVELPDVQGVPQPLCSNLSCGAYFHRTCLHMVYINFDYLSFYFPNCVL 426
D VC +C V+ D + LC +C A +H CL+ I ++Y P+CV+
Sbjct: 1286 DEGVCKVC-GVDKDDDSVL---LCD--TCDAEYHTYCLNPPLIRIPDGNWYCPSCVI 1336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,242
Number of Sequences: 28952
Number of extensions: 273545
Number of successful extensions: 691
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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