Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0718
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 64 7e-11
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 64 7e-11
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 57 8e-09
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 51 4e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 51 4e-07
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 48 5e-06
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 48 5e-06
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 47 6e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 37 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 6e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 43 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 1e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 41 4e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 41 4e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 7e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.002
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 39 0.002
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 39 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.002
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 39 0.002
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 31 0.003
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.004
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 30 0.005
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 37 0.007
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.007
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 37 0.007
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 36 0.012
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 36 0.012
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 36 0.016
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.016
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 36 0.016
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 36 0.016
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 36 0.016
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 36 0.021
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 36 0.021
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 35 0.027
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 35 0.027
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 35 0.027
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 35 0.027
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.027
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.027
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.027
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 35 0.027
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 35 0.036
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.036
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 35 0.036
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.036
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.036
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.036
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 35 0.036
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 35 0.036
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 34 0.048
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 34 0.063
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.063
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 34 0.063
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.063
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.084
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.084
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 33 0.084
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 33 0.084
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.084
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 33 0.11
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 33 0.11
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.11
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.11
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.26
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 32 0.26
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.26
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.26
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 31 0.34
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.34
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.34
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.34
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.34
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.34
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 0.34
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 0.34
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.45
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 31 0.45
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.45
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.45
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.59
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.59
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 30 0.78
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 30 0.78
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 0.78
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 0.78
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 0.78
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 0.78
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 30 0.78
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 0.78
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 0.78
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 0.78
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 0.78
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 30 0.78
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 0.78
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.78
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.78
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.78
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.0
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.0
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.0
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 30 1.0
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.0
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 29 1.4
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 29 1.4
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.4
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 1.4
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 29 1.4
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.4
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 1.4
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 1.8
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 1.8
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 1.8
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 1.8
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 1.8
At2g47390.1 68415.m05915 expressed protein 29 1.8
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 2.4
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 29 2.4
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 2.4
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 2.4
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 2.4
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 3.1
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 28 3.1
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 3.1
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 28 3.1
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 3.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 3.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 3.1
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote... 28 3.1
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 3.1
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 3.1
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 3.1
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 28 4.2
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 4.2
At5g09970.1 68418.m01152 cytochrome P450 family protein 28 4.2
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 27 5.5
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 5.5
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 27 5.5
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 27 5.5
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 5.5
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 27 5.5
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 7.3
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 27 7.3
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 27 7.3
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.3
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 7.3
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 27 9.6
At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase GI:... 27 9.6
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 27 9.6
At2g33440.1 68415.m04099 splicing factor family protein similar ... 27 9.6
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 27 9.6
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 63.7 bits (148), Expect = 7e-11
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG-------- 420
+ D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K G
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKT 108
Query: 421 -KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGG+ S +++DE+++FF+++G ++E
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVE 137
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPKKAKARHGKIFVGGL 441
D T RSRGF F++F + E +D++++ G + + KK +PKK+ R +
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHP 202
Query: 442 SSEISDDEIRNFFSEFG 492
S+D ++ +G
Sbjct: 203 RGRSSNDSYASYGGPYG 219
Score = 34.3 bits (75), Expect = 0.048
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 125 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G S++ N G K+F+GGL +TT HFG YGE
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGE 44
Score = 30.3 bits (65), Expect = 0.78
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGG+ T EL+D F YG
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 409 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
A GKIF+GGL + ++ F ++G I +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITD 47
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 63.7 bits (148), Expect = 7e-11
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG-------- 420
+ D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K G
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKT 108
Query: 421 -KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGG+ S +++DE+++FF+++G ++E
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVE 137
Score = 34.3 bits (75), Expect = 0.048
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 125 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G S++ N G K+F+GGL +TT HFG YGE
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGE 44
Score = 33.9 bits (74), Expect = 0.063
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAG 363
D T RSRGF F++F + E +D++++ G
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 30.3 bits (65), Expect = 0.78
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGG+ T EL+D F YG
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 409 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
A GKIF+GGL + ++ F ++G I +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITD 47
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 56.8 bits (131), Expect = 8e-09
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 12/95 (12%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------------ 399
++S+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 93 VDSV-IMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDTDI 150
Query: 400 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
KA ++ KIFVGGL + +DE++N+F +G I+E
Sbjct: 151 KAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 414
D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 191 DHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +2
Query: 86 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAY 250
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 251 GE 256
GE
Sbjct: 90 GE 91
Score = 33.5 bits (73), Expect = 0.084
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+FVGG+S E + + N+F +FG +++
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVD 94
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RK+FVGGL EL+++F YG+
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGD 182
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG---------K 423
+ D TG+ RGF F+ + +DKV+ H I K+V+ K+ R K
Sbjct: 73 IMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPRGSMSSNDFKTKK 131
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTILE 504
IFVGG+ S + DDE + FF +FG + E
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKE 158
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +2
Query: 77 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 414
+ D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 30.7 bits (66), Expect = 0.59
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GKIFVGGL+ E + E F ++G I +
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITD 70
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 6e-08
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 414
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 415 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 504
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SW+T + LRD+F YG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD 31
Score = 36.3 bits (80), Expect = 0.012
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGL T +E +++F +G
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFG 134
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 6e-08
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 414
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 415 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 504
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SW+T + LRD+F YG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD 31
Score = 36.3 bits (80), Expect = 0.012
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGL T +E +++F +G
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFG 134
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 54.0 bits (124), Expect = 6e-08
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 414
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 415 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 504
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SW+T + LRD+F YG+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGD 31
Score = 36.3 bits (80), Expect = 0.012
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGL T +E +++F +G
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFG 134
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 420
+E++ +K D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 33 LEAVIMK-DRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDDHVVFN 90
Query: 421 ----------------KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGGL+S +++ E + +F++FG I +
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 41.1 bits (92), Expect = 4e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SWET+ LRD+F ++GE
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGE 31
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GG+S E S+D +R++F FG +LE
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE 34
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 158 APGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
+PG + +K+FVGGL+ T E + +F +G
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 130
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 51.2 bits (117), Expect = 4e-07
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 420
+E++ +K D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 33 LEAVIMK-DRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDDHVVFN 90
Query: 421 ----------------KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGGL+S +++ E + +F++FG I +
Sbjct: 91 KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 41.1 bits (92), Expect = 4e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SWET+ LRD+F ++GE
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGE 31
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GG+S E S+D +R++F FG +LE
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE 34
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 158 APGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
+PG + +K+FVGGL+ T E + +F +G
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 130
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 49.6 bits (113), Expect = 1e-06
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 25/103 (24%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH----------- 417
V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 37 VMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREEQQVSGRTGNL 95
Query: 418 --------------GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGGL ++D+E R +F +G + +
Sbjct: 96 NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 173 DDRKLFVGGLSWETTXKELRDHFGAYGE 256
D KLFVGG+SWET +LR+HF YGE
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGE 31
Score = 34.3 bits (75), Expect = 0.048
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTI 498
GK+FVGG+S E +D++R F+ +G +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEV 32
Score = 30.7 bits (66), Expect = 0.59
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTXKELRDHFGA 247
+++ ++ + G + + N++ + G D +K+FVGGL T +E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 248 YG 253
YG
Sbjct: 133 YG 134
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------- 405
IE++ +K D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 33 IEAVILK-DRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVN 90
Query: 406 -------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 495
R KIFVGGL S +++ + + +F +FGT
Sbjct: 91 RSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 40.7 bits (91), Expect = 6e-04
Identities = 13/30 (43%), Positives = 24/30 (80%)
Frame = +2
Query: 167 RDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+ D+ KLF+GG+SW+T + L+++F ++GE
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGE 31
Score = 37.1 bits (82), Expect = 0.007
Identities = 11/30 (36%), Positives = 24/30 (80%)
Frame = +1
Query: 415 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
+GK+F+GG+S + +++ ++ +FS FG ++E
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIE 34
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 110 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
N N S S PGR RK+FVGGL T + + +F +G
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFG 132
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------- 405
IE++ +K D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 33 IEAVILK-DRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVN 90
Query: 406 -------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 495
R KIFVGGL S +++ + + +F +FGT
Sbjct: 91 RSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 40.7 bits (91), Expect = 6e-04
Identities = 13/30 (43%), Positives = 24/30 (80%)
Frame = +2
Query: 167 RDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+ D+ KLF+GG+SW+T + L+++F ++GE
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGE 31
Score = 37.1 bits (82), Expect = 0.007
Identities = 11/30 (36%), Positives = 24/30 (80%)
Frame = +1
Query: 415 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
+GK+F+GG+S + +++ ++ +FS FG ++E
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIE 34
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 110 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
N N S S PGR RK+FVGGL T + + +F +G
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFG 132
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH------ 417
+E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 29 LEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMRQPA 87
Query: 418 ---GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
+IFV + S +S+ + R+ F +G I +
Sbjct: 88 KKVTRIFVARIPSSVSESDFRSHFERYGEITD 119
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTI 498
KIFVG L E S D++R++F FG I
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHI 266
Score = 31.1 bits (67), Expect = 0.45
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 143 HNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
+ E R K+FVG L E + +LRD+FG +G
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFG 264
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 47.6 bits (108), Expect = 5e-06
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +1
Query: 265 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--------- 417
+ V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 35 VTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSREEQSPAGRSG 93
Query: 418 ----------------GKIFVGGLSSEISDDEIRNFFSEFGTI 498
KIFVGGL ++ DE R +F +G +
Sbjct: 94 TFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPV 136
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
+ D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 141 IMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 37.9 bits (84), Expect = 0.004
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 173 DDRKLFVGGLSWETTXKELRDHFGAYGE 256
D KLF+GG+SW+T LR++F +GE
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGE 31
Score = 35.5 bits (78), Expect = 0.021
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GG+S + ++ +R +FS FG +L+
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQ 34
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGL T E R +F YG
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYG 134
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 47.2 bits (107), Expect = 6e-06
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE----HTINNKKVDPKKAK----- 408
+E++ + D TGR+RGF FIVF P ++V+ T+ KK P+ +
Sbjct: 42 VEAV-IMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKR 100
Query: 409 ------------------ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
AR KIFVGGL S I++ E +N+F +FGTI +
Sbjct: 101 HASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIAD 150
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 39.5 bits (88), Expect = 0.001
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+SW+T + L+++FG YG+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGD 40
Score = 32.7 bits (71), Expect = 0.15
Identities = 9/29 (31%), Positives = 22/29 (75%)
Frame = +1
Query: 418 GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
GK+F+GG+S + ++ ++ +F ++G ++E
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVE 43
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGL T E +++F +G
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFG 146
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 36.7 bits (81), Expect = 0.009
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGG++ E S++ ++ +FS +G +LE
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLE 34
Score = 35.5 bits (78), Expect(2) = 3e-05
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 409 ARHGKIFVGGLSSEISDDEIRNFFSEFG 492
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 32.3 bits (70), Expect = 0.19
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 170 DDDR-KLFVGGLSWETTXKELRDHFGAYG 253
D DR KLFVGG++ ET+ + L+ +F YG
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYG 30
Score = 31.1 bits (67), Expect = 0.45
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYG 253
+K+FVGGLS TT +E + +F +G
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 29.1 bits (62), Expect(2) = 3e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 289 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 417
TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 43 TGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 34.3 bits (75), Expect(2) = 6e-05
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 337 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVV 348
Score = 29.1 bits (62), Expect(2) = 6e-05
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF 324
++S V D NTGRS+G+ F+ F
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRF 251
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 119 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+G S + S ++ G + +FVGG+ + ++LR F +GE
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGE 346
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVDPKKAKA 411
++ +N+ D T SRG F++ + E DK++ A G +++ K + +
Sbjct: 44 VDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELER 103
Query: 412 RHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
K+FVG L +S+ E+++ FS++GTI
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVDPKKAKA 411
++ +N+ D T SRG F++ + E DK++ A G +++ K + +
Sbjct: 44 VDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYADGELER 103
Query: 412 RHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
K+FVG L +S+ E+++ FS++GTI
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 41.1 bits (92), Expect = 4e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 415 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
H K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILE 45
Score = 36.7 bits (81), Expect = 0.009
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET E+R +F +GE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGE 42
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 277 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 50 TDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 420
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 421 -------KIFVGGLSSEISDDEIRNFFSEFGTI 498
K+FVG L +S+ E+++ FSE+GTI
Sbjct: 94 ELERLEHKLFVGMLPKNVSETEVQSLFSEYGTI 126
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 59 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 346 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 61
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 158 APGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
+PG + +K+FVGGL+ T E + +F +G
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFG 57
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 40.3 bits (90), Expect = 7e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET + LR HF YGE
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGE 49
Score = 34.3 bits (75), Expect = 0.048
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 55 VIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E + +R F ++G ILE
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILE 52
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPK 399
I S V DP+ G+S+G+ F+ + E+ + +N+K+V DP
Sbjct: 159 ILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS 217
Query: 400 KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 492
K + ++V LS +SD+E+ F EFG
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248
Score = 36.3 bits (80), Expect = 0.012
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKAKA 411
+ S+ V D T RS G+ ++ + P+ + + +N + + DP K+
Sbjct: 71 VVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKS 130
Query: 412 RHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
G IF+ L I + FS FG IL
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 406 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
K++ ++V L ++DD++R F+ FGTI
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTI 353
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILE 45
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET E+R +F +GE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGE 42
Score = 35.1 bits (77), Expect = 0.027
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 277 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 50 TDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILE 45
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET E+R +F +GE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGE 42
Score = 35.1 bits (77), Expect = 0.027
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 277 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 50 TDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVDPKKAKA 411
+ S+ V D N RS G+A+I F P + M A +T I DP +
Sbjct: 75 VVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS 133
Query: 412 RHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
G IF+ L + I + + FS FGTIL
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTIL 163
Score = 37.5 bits (83), Expect = 0.005
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTIN 378
+F S I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 379 NKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
++ D R ++V L EI +DE+R F +FG I
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET + LR HF YG+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGD 49
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPES 339
V TD NTGRS+G+ F+ F+ PE+
Sbjct: 55 VITDKNTGRSKGYGFVTFRDPEA 77
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E + +R F ++G ILE
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILE 52
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 31.1 bits (67), Expect(2) = 0.003
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG 420
+E + V D TGRSRGF F+ S+ +V AA + N ++D + + G
Sbjct: 117 VEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNAG 167
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/46 (21%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 414
D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 26.2 bits (55), Expect(2) = 0.003
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+++VG LS + D + + FSE G ++E
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVE 232
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 289 TGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLS 444
T RS G+A++ F PE + M + + I ++ + DP + G +F+ L
Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLD 140
Query: 445 SEISDDEIRNFFSEFGTIL 501
+ I + + FS FGTIL
Sbjct: 141 ASIDNKALYETFSSFGTIL 159
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 30.3 bits (65), Expect = 0.78
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKA 411
+ S+ V D T S G+ ++ + + +K M ++ N K+ D ++
Sbjct: 72 VVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRS 131
Query: 412 RHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
G +FV L + + + FS GTI+
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Score = 29.5 bits (63), Expect(2) = 0.005
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
++V L ++D+++R F+EFGTI
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTI 354
Score = 27.1 bits (57), Expect(2) = 0.005
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 292 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 402
G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 262 GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
IFVGGL + ++DDE+++ F +FG +L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELL 287
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 137 QDHNSAEAPGRD-DDRKLFVGGLSWETTXKELRDHFGAYGE 256
Q+ A A D ++ +FVGGL T EL+ FG +GE
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGE 285
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +1
Query: 409 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILE 504
A+ G +IFVGGLS E++D ++ FS FG IL+
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILD 35
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDPK 399
+ + +TGRSRGF FI F ++D+ + G+ I+ + +PK
Sbjct: 38 IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
++FVGGLS E T ++L F +G+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGD 32
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Frame = +1
Query: 292 GRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGL 441
G+SRG+ F+ F+ A ++++ + A + K K D K + ++ +++ L
Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNL 208
Query: 442 SSEISDDEIRNFFSEFGTIL 501
+++S+D +R F+EFG I+
Sbjct: 209 DADVSEDLLREKFAEFGKIV 228
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 382 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+K + +K A+ I+V ++ ++++E+R FS+ GTI
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI 330
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 390
+F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 43 AFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Query: 391 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
P + G +FV L +++ +++ F +FG I+
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIV 139
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 36.3 bits (80), Expect = 0.012
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
+FVGGL + ++DD ++N FS++G I+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIV 288
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 122 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTXKELRDHFGAYGE 256
G DS ++A +D +FVGGL T L++ F YGE
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGE 286
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 36.3 bits (80), Expect = 0.012
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
+FVGGL + ++DD ++N FS++G I+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIV 288
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 122 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTXKELRDHFGAYGE 256
G DS ++A +D +FVGGL T L++ F YGE
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGE 286
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.9 bits (79), Expect = 0.016
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GGLSW + L+D F ++GE
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGE 66
Score = 31.9 bits (69), Expect = 0.26
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GGLS + + +++ FS FG + E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAE 69
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVF 324
+F S + + + D +GRSRGF F+ F
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
IFVGGL S ++D++++ FSEFG I+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIV 333
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+++ V D NTGRS+G+ F+ F K M
Sbjct: 226 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 89 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
T + NG + GG + G + +FVGGL T ++L+ F +GE
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGE 331
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 35.9 bits (79), Expect = 0.016
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET + ++ HF +GE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGE 38
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 35.9 bits (79), Expect = 0.016
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET + ++ HF +GE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGE 38
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 35.9 bits (79), Expect = 0.016
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET + ++ HF +GE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGE 38
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 35.5 bits (78), Expect = 0.021
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+W+T + + DHF YG+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGD 42
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ + + + + F ++G ILE
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILE 45
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.021
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGGL+ E D +R +F +FG I+E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVE 50
Score = 34.3 bits (75), Expect = 0.048
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET +R +F +GE
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGE 47
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPES 339
+E++ V TD NTGRS+G+ F+ FK E+
Sbjct: 49 VEAV-VITDKNTGRSKGYGFVTFKEAEA 75
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.1 bits (77), Expect = 0.027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GGLSW T LRD F +G+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGD 60
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GGLS D +R+ F+ FG +++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVD 63
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.1 bits (77), Expect = 0.027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GGLSW T LRD F +G+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGD 60
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GGLS D +R+ F+ FG +++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVD 63
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.1 bits (77), Expect = 0.027
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 95 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
N+L+G G S + G R KLFVGGLSW T L+ F ++GE
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGE 60
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+F S + V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGLS D ++ F+ FG + E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.1 bits (77), Expect = 0.027
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 95 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
N+L+G G S + G R KLFVGGLSW T L+ F ++GE
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGE 60
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+F S + V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGLS D ++ F+ FG + E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 35.1 bits (77), Expect = 0.027
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 131 DSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
DS+D + +E+P +KLF+ GLS+ T+ K LR F +GE
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGE 307
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 334 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
ES++K + + D + + K+F+ GLS S+ +R F FG ++E
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVE 310
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.027
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 155 EAPGRD-DDRKLFVGGLSWETTXKELRDHFGAYGE 256
EA RD RK+FV GL WETT + L F YGE
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 384
IE V D TG+++GF F++FK + + + + I N+
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.027
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 155 EAPGRD-DDRKLFVGGLSWETTXKELRDHFGAYGE 256
EA RD RK+FV GL WETT + L F YGE
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 384
IE V D TG+++GF F++FK + + + + I N+
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.1 bits (77), Expect = 0.027
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 414
+F S IE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEK 486
Query: 415 HGK 423
GK
Sbjct: 487 PGK 489
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 155 EAPGRD-DDRKLFVGGLSWETTXKELRDHFGAYGE 256
E+ RD R +FV G W+TT + L+ F +YGE
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGE 433
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 34.7 bits (76), Expect = 0.036
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVG 435
I + + D ++G S+G+AF+ FK + K + K ++F+G
Sbjct: 142 IFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIG 201
Query: 436 GLSSEISDDEIRNFFSEFGTILE 504
+ ++DE R + G +E
Sbjct: 202 NIPKNWTEDEFRKVIEDVGPGVE 224
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 415 HG-KIFVGGLSSEISDDEIRNFFSEFGTILE 504
HG ++F+GGL ++ ++++R+ E G I E
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFE 144
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 256 IESINVKTDP-NTGRSRGFAFIVF 324
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYG 253
D + + F+GGL+W T+ + LRD F YG
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYG 31
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHG 420
V D +GRSRGF FI F +++D+ +AA ++ + + KA+ G
Sbjct: 38 VVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQG 88
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 34.7 bits (76), Expect = 0.036
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 155 EAPGRDDD-RKLFVGGLSWETTXKELRDHFGAYGE 256
E+ RD R +FV GL W+TT + L+ F YGE
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGE 188
Score = 31.1 bits (67), Expect = 0.45
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 390
I +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 189 ITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.7 bits (76), Expect = 0.036
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 176 DRKLFVGGLSWETTXKELRDHFGAYGE 256
+ ++FVGGLSW+ T ++L F YG+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGK 37
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+IFVGGLS ++++ ++ + F +G I E
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITE 40
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 420
I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.7 bits (76), Expect = 0.036
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 176 DRKLFVGGLSWETTXKELRDHFGAYGE 256
+ ++FVGGLSW+ T ++L F YG+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGK 37
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+IFVGGLS ++++ ++ + F +G I E
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITE 40
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 420
I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
IFVGGL S ++D++++ F+EFG I+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIV 331
Score = 34.3 bits (75), Expect = 0.048
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Frame = +1
Query: 250 R*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP----------- 396
R I S+ V + N G S G+ F+ F++ + DKV+ T P
Sbjct: 127 REIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTG 186
Query: 397 KKAKARHG---KIFVGGLSSEISDDEIRNFFSE 486
+K +G IFVG LS ++SD+ + FSE
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+++ V D NTGRS+G+ F+ F K M
Sbjct: 224 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTXKELRDHFGAYGE 256
T + NG + GG + + P D + +FVGGL T ++L+ F +GE
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGE 329
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.7 bits (76), Expect = 0.036
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E +RN+F +FG I+E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE 35
Score = 34.3 bits (75), Expect = 0.048
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET LR++F +G+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGD 32
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
+E++ V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 34 VEAV-VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.7 bits (76), Expect = 0.036
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVGGL+ E +RN+F +FG I+E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE 35
Score = 34.3 bits (75), Expect = 0.048
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGL+WET LR++F +G+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGD 32
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
+E++ V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 34 VEAV-VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 34.3 bits (75), Expect = 0.048
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Frame = +1
Query: 250 R*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP----------- 396
R I S+ V + N G S G+ F+ F++ + DKV+ T P
Sbjct: 127 REIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTG 186
Query: 397 KKAKARHG---KIFVGGLSSEISDDEIRNFFSE 486
+K +G IFVG LS ++SD+ + FSE
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+++ V D NTGRS+G+ F+ F K M
Sbjct: 224 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 33.9 bits (74), Expect = 0.063
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 40 VVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
D + K++V GL W T + L +F +GE
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGE 34
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.063
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 334 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 286 NTGRSRGFAFIVFKAPESIDKVMA 357
NTGRSRGF FI F++ E++ +A
Sbjct: 255 NTGRSRGFGFISFESAENVQSALA 278
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFG 244
D K++ G L W T + L+D FG
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFG 240
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVG 435
+ + + D T RSRGF F+ + E + M N+ ++ + K ++ G
Sbjct: 142 VVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNFPEVPRG 197
Query: 436 GLSSEISDDEIRN 474
G +E+ +IR+
Sbjct: 198 G-ENEVMRTKIRD 209
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.9 bits (74), Expect = 0.063
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV------------DPK 399
IE D +G+S+G+ FI+FK+ + + I + +P
Sbjct: 154 IEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNPV 213
Query: 400 KAKARH-------GKIFVGGLSSEISDDEIRNFFSEFGTILE 504
A A+H KI+V +S++I ++ FFS FG I E
Sbjct: 214 VAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEE 255
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RK+FV GL W+T L D F YGE
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGE 153
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
IE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 253 IEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.9 bits (74), Expect = 0.063
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 420
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 421 ----------------KIFVGGLSSEISDDEIRNFFSEFGTI 498
K+FVG L +S+ E+++ FSE+GTI
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTI 135
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 357
+ V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.084
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 391 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+P++ + GKIFVG L + I E FF +FG I
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPI 191
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 33.5 bits (73), Expect = 0.084
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 128 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G + + + E+P R L+VGGL+ +++RD F A+GE
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGE 253
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 33.5 bits (73), Expect = 0.084
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 414
D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 68 DRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGG+S+ T LR+ F YGE
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGE 59
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGG+S + +R FS++G +++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVD 62
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.5 bits (73), Expect = 0.084
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 358 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
AG H N D ++ + IFVGGL ++++++++ FS+FG ++
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 98 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
Q NG+ N + + G ++ +FVGGL + T ++L F +GE
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF 324
++ V D NTGRS+G+ F+ F
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRF 262
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 155 EAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
E P + + L+VGGL+ +++ DHF AYGE
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGE 250
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVG L+W TT +LR +F +G+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQ 37
Score = 31.5 bits (68), Expect = 0.34
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVG L+ + D++R +F +FG +++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVD 40
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 128 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G + + + E+P + + L+VGGL+ +++RD F A+GE
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGE 253
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 423
+ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 101 VTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 146 NSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+ AE PG L+V GLS T ++L DHF G+
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGK 100
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 31.9 bits (69), Expect = 0.26
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 325 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 504
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFI 318
+ ++V TD TG SRGFA+I
Sbjct: 509 VTRVHVPTDRETGASRGFAYI 529
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 357
++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 471 VQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 414
D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
D + + FVGGL+W T + L F YG+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGD 33
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 414
D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
D + + FVGGL+W T + L F YG+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGD 33
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 98 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
++ AE G SQD + SA D R ++VG + + T +E++ HF + G
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 127
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 104 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTXKELRDHFGAYGE 256
+G+A GD + ++A D D +LFV L + T +EL +HF +G+
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGK 286
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RK+FV GL W+T + L + F YGE
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGE 165
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
IE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 271 IEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KI+V + +E+ ++ FFS+FG I E
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEE 273
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RK+FV GL W+T + L + F YGE
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGE 165
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
IE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 271 IEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KI+V + +E+ ++ FFS+FG I E
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEE 273
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RK+FV GL W+T + L + F YGE
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGE 165
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
IE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 271 IEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KI+V + +E+ ++ FFS+FG I E
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEE 273
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.34
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K++VGG+ + ++DEIR++F G I++
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIK 189
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYG 253
KL+VGG+ +++T E+R +F + G
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCG 185
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHF 241
D ++++G L+W+TT +++R F
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLF 282
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 201 DKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RKLF+ GL+ +TT + LR F +YG+
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGD 100
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVG 435
+E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 101 LEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQLAASGNQ 155
Query: 436 GLSSEISDDEIRNFF 480
G S+I+D +R +
Sbjct: 156 GTGSQIADISMRKIY 170
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 405
D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 201 DKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 179 RKLFVGGLSWETTXKELRDHFGAYGE 256
RKLF+ GL+ +TT + LR F +YG+
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGD 100
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVG 435
+E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 101 LEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQLAASGNQ 155
Query: 436 GLSSEISDDEIRNFF 480
G S+I+D +R +
Sbjct: 156 GTGSQIADISMRKIY 170
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 408
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 31.1 bits (67), Expect = 0.45
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 405
+ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 203 VVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 27.5 bits (58), Expect = 5.5
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV-------------D 393
+E + V D +GRSR F F K+ E + V+ +T+ +++ D
Sbjct: 102 VEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPD 161
Query: 394 PKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTIL 501
++ K++VG L+ ++ + + N FSE G ++
Sbjct: 162 LSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVV 204
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 304 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 483
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 484 EFGTIL 501
+FG ++
Sbjct: 99 QFGNLI 104
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYG 253
KL+V GLS+ TT LRD F +G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFG 101
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 31.1 bits (67), Expect = 0.45
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Frame = +1
Query: 259 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 408
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 409 --ARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
K+FVG LS ++ + + F E G ++
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+ + KLFVG LSW T + L F G+
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGD 202
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 30.7 bits (66), Expect = 0.59
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHGK--- 423
+E V + +T +SRGF F+ E +K + +N +++ +A R +
Sbjct: 139 VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER 198
Query: 424 ----------IFVGGLSSEISDDEIRNFFSEFGTILE 504
I+VG L ++ + FSE G +++
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVD 235
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA 360
V +D TGRSRGF F+ ++ +AA
Sbjct: 238 VVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.59
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Frame = +1
Query: 262 SINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH------------TINNK 384
S+ V +P TG SRG ++ A S+D G T N
Sbjct: 136 SVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNP 195
Query: 385 KV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
+V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 196 EVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIV 239
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYG 253
+ K++VG L W T LR+HF +G
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFG 236
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 357
I S V D TGR+R FAF+ F + E D ++
Sbjct: 238 IVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.3 bits (65), Expect = 0.78
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+F+GG++ + +D +R F+++G +++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVD 68
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAA 360
D TGRSRGF F+ F + E+ + A
Sbjct: 74 DRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GG+++ LR+ F YGE
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGE 65
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 360
+F S + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 50 AFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 0.78
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
+ FVGGL+W T ++L+ F +G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD 31
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFK 327
D +GRSRGF F+ FK
Sbjct: 40 DRESGRSRGFGFVTFK 55
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 0.78
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
D +GRSRGF F+ FK +K M +N K++D
Sbjct: 40 DRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
+ FVGGL+W T ++L+ F +G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD 31
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 0.78
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
D +GRSRGF F+ FK +K M +N K++D
Sbjct: 40 DRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
+ FVGGL+W T ++L+ F +G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD 31
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 0.78
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 393
D +GRSRGF F+ FK +K M +N K++D
Sbjct: 40 DRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
+ FVGGL+W T ++L+ F +G+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD 31
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 343 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
DK + G + ++ D K + ++V L+ +DD+++N F E+G I
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 406 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
K + ++V L ISD++++ FS FGT+
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 158
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 357
+ S V DPN G S+G F+ F PE + M+
Sbjct: 158 VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 30.3 bits (65), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVG + +++EIR +F + G +LE
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLE 148
Score = 30.3 bits (65), Expect = 0.78
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 426
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 427 FVGGLSSEISDDEIRNFFSEFGTI 498
FVG L+ + ++ E+ F +FG +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHV 237
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
K+FVG + +++EIR +F + G +LE
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLE 148
Score = 30.3 bits (65), Expect = 0.78
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 426
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 427 FVGGLSSEISDDEIRNFFSEFGTI 498
FVG L+ + ++ E+ F +FG +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHV 237
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 30.3 bits (65), Expect = 0.78
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Frame = +1
Query: 265 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-------GEHTINNKKVDPKKAKARHGK 423
++ K G+S+GF F+ F +S +A G+ K ++ + A G
Sbjct: 139 LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN 198
Query: 424 -----IFVGGLSSEISDDEIRNFFSEFGTI 498
++V L ++DD + FS++GT+
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 354
+ S+ V D GRSRGF F+ F PE+ K M
Sbjct: 228 VSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 30.3 bits (65), Expect = 0.78
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKAR 414
+ ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 51 VVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDV 110
Query: 415 HGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+F+G L ++ + + + FS FG I
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVI 138
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 384
+ DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 30.3 bits (65), Expect = 0.78
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYGE 256
D++ + FVGGL+W T + + F +GE
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGE 69
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESI 342
D TGRS+GF F+ FK +S+
Sbjct: 78 DRETGRSKGFRFVTFKDEDSM 98
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 360
+ N+ D TG S+G+AF V++ P D AA
Sbjct: 401 LRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 89 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
T NG GGG + + P R + ++ V GL + ++L+DH G+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGD 144
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 89 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
T NG GGG + + P R + ++ V GL + ++L+DH G+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGD 144
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 89 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
T NG GGG + + P R + ++ V GL + ++L+DH G+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGD 144
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKKAKA 411
+ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P K
Sbjct: 42 VVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101
Query: 412 RHGKI 426
G++
Sbjct: 102 SKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKKAKA 411
+ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P K
Sbjct: 42 VVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101
Query: 412 RHGKI 426
G++
Sbjct: 102 SKGRV 106
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 361 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
GE NN + + + + VG +SS + D E++ F +FG I
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDI 243
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAKARHG 420
I+ + + D T SRGFAF+ F + E K + A T N K + AK+ HG
Sbjct: 484 IKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVHG 541
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 369
+ + V + N+G SRGFAFI F ++ +M EH
Sbjct: 324 LHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 104 NGNAENGG--GDSQDHNSAEAPGRDDDR 181
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 357
+F S + V TD ++GRS+GF F+ + E +K A
Sbjct: 53 AFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
+LFV GLS TT ++L+D F ++G+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQ 59
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 391 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 501
DP + G +FV L I + ++ + FS FG +L
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVL 58
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 406 KARHG-KIFVGGLSSEISDDEIRNFFSEFGTI 498
K R G ++V L + + ++ FSEFGTI
Sbjct: 218 KTRKGMNLYVKNLDDSVDNTKLEELFSEFGTI 249
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 423
++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 677 VDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 423
++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 677 VDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 62 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 181
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 59 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 151
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/79 (20%), Positives = 34/79 (43%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVG 435
+ + + +P T +S+G AF+ F E + + + + N K A + +FVG
Sbjct: 240 VTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVG 299
Query: 436 GLSSEISDDEIRNFFSEFG 492
+ + + +R +G
Sbjct: 300 NICKIWTPEALREKLKHYG 318
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 427 FVGGLSSEISDDEIRNFFSEFGTIL 501
+VG L S+ +++++N FS+FG ++
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVI 35
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K+FVGGLS T + L++ FG++G+
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGK 61
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
KIFVGGLS + ++ F FG I++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVD 64
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 134 SQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
S ++++ AP R D ++ V GL + ++L+DH G+
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGD 134
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 161 PGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
P + LFV GLS TT + LR F +GE
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGE 81
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHGK--- 423
+E V + T +SRGF F+ + + + + + +N + + KA R +
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235
Query: 424 ----------IFVGGLSSEISDDEIRNFFSEFGTILE 504
++VG L ++ + + FSE G ++E
Sbjct: 236 APRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVE 272
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDKVMAA 360
D TGRSRGF F+ + +++ ++A
Sbjct: 278 DRETGRSRGFGFVTMSDVDELNEAISA 304
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+++VG LS +DD +R FS +G +++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVD 31
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 107 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G GGGD P R + ++ V GL + ++L+DH GE
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGE 145
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 107 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G GGGD P R + ++ V GL + ++L+DH GE
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGE 145
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 104 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRD 235
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.7 bits (61), Expect = 2.4
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTIL 501
IFVG + +++D++++ F +FG ++
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELV 305
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPES 339
I +N+ D TG+S+GFAF+ ++ S
Sbjct: 62 IVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 134 SQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYG 253
SQ+ + E + RKLFV L W + ++ + FG G
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCG 119
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 343 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 498
+K +A E T +K + + K+FV L +S ++I F + GT+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTV 121
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTI 498
+++VG L +S+D++R F FG++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 146 NSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
+ AE PG L+V GLS T ++L DHF G+
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGK 70
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 390
+ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 71 VTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 170 DDDRKLFVGGLSWETTXKELRDHFGAYG 253
DD ++VGGL ++ T + +R F YG
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYG 31
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+FV G S +S+ ++ FSEFG +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQV 84
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+FV G S +S+ ++ FSEFG +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQV 84
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
+FV G S +S+ ++ FSEFG +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQV 103
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVF 324
+E + + DP TG+ +GF FI F
Sbjct: 291 VELVQLPLDPETGQCKGFGFIQF 313
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 176 DRKLFVGGLSWETTXKELRDHFGAYG 253
DRKL+VG L + + +LR F A+G
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFG 289
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESID 345
+E + V D TGRSRGF F+ ++
Sbjct: 125 VEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 414
D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 283 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Frame = +2
Query: 107 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G+ +GGG S S G +L+VG LSW L + F G+
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGK 274
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+++VG LS + D + N F+E G ++E
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVE 277
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESID 345
+E + V D TGRSRGF F+ ++
Sbjct: 125 VEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 DPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 414
D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 291 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Frame = +2
Query: 107 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGE 256
G+ +GGG S S G +L+VG LSW L + F G+
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGK 282
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTILE 504
+++VG LS + D + N F+E G ++E
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVE 285
>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 1002
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 304 LVIXLCLDLSLH*YSLFTVCSKMITEL-LXCGLPAQPTNKKFSVVIASWGLST 149
L++ L L L LH FTV +K ITEL L + T + S ++ SW LST
Sbjct: 3 LLLLLLLLLLLHISHSFTV-AKPITELHALLSLKSSFTIDEHSPLLTSWNLST 54
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 185 LFVGGLSWETTXKELRDHFGAYGE 256
L+VG L+ ETT +L + FG YG+
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGD 43
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 424 IFVGGLSSEISDDEIRNFFSEFGTI 498
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 3.1
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -3
Query: 282 ICLYINTLYSPYAPKXXXXXXXXXXXXSPPTK---SFLSSSRPGASALL*SCESPPPFSA 112
I L+I T S +P S P+ S LS S P +L S PPP S+
Sbjct: 16 ILLFITTSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSS 75
Query: 111 FPLSWLSVVIS 79
PLS LS +S
Sbjct: 76 SPLSSLSPSLS 86
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 235 SFWSIR*IESINVKTDPNTGRSRGFAFIVFK 327
SF + V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
K++VGGL W T + L + F +GE
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGE 38
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTIL 501
KI+VGGL + + NFF FG I+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEII 40
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 187
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At5g09970.1 68418.m01152 cytochrome P450 family protein
Length = 536
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 305 PRDLPVFGSVFTLILSI-HRML 243
PR +PVFGS+FTL + HR L
Sbjct: 73 PRGIPVFGSLFTLSRGLAHRTL 94
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +1
Query: 256 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAK 408
++ + V + TG+S+ F FI F+ PE + +AAG EH + ++P+ K
Sbjct: 86 VKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVK 142
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 292 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 390
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFK 327
V D TGRSRGF F+ F+
Sbjct: 175 VMWDQKTGRSRGFGFVSFR 193
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 155 EAPGRDD-DRKLFVGGLSWETTXKELRDHFGAYGE 256
E DD +R LF+ L ++ T +E++ F +GE
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGE 586
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFK 327
V D TGRSRGF F+ F+
Sbjct: 183 VMWDQKTGRSRGFGFVSFR 201
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 271 VKTDPNTGRSRGFAFIVFK 327
V D TGRSRGF F+ F+
Sbjct: 170 VMWDQKTGRSRGFGFVSFR 188
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -1
Query: 395 GSTFLLLM----VCSPAAMTLSIDSGALNTMKA 309
G++ LL++ +CS +A+T +D+ ALN +K+
Sbjct: 6 GASLLLILFFFQICSVSALTNGLDASALNALKS 38
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 182 KLFVGGLSWETTXKELRDHFGAYGE 256
KLF+GGLS+ TT + L + F G+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQ 59
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 295 RSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKI 426
+ R F F+ F PE++ ++A G H + + +V K K + GK+
Sbjct: 191 QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEK-GKV 234
>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 259 LFTVCSKMITELLXCGLPAQPTNKKFSVVIASWG 158
L ++C+ + +L GL + +NK F VI WG
Sbjct: 289 LGSLCNLPLAQLKELGLGLEASNKPFIWVIREWG 322
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 101 LNGNAENGGGDSQDHN-SAEAPGRDD 175
+NGN+ NG D +DHN E G D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 92 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFG 244
D+ +GGG S + + G DD +GG S ++ R+ FG
Sbjct: 677 DDDRGSRRSSGGGSSWSRGGSSSRGSSDD--WLIGGRSSSSSRAPSRESFG 725
>At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase
GI:6006801, GI:7672685 from [Arabidopsis thaliana]
Length = 472
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 432 DKNLPMSCFSLLWVYFLVVDG 370
++NLP C L++ Y L++DG
Sbjct: 414 EENLPYLCMDLVYQYTLLIDG 434
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 295 RSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKI 426
+ R F F+ F PE++ ++A G H + + +V K K + GK+
Sbjct: 294 QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEK-GKV 337
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 421 KIFVGGLSSEISDDEIRNFFSEFGTI 498
KIF+GG S IS + + S FG +
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPL 66
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 308 NPRDLPVFGSVFTLILSIHRMLQ 240
+P ++ V GSVF ++LS+H +Q
Sbjct: 8 SPAEITVMGSVFCVLLSMHFTMQ 30
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,959
Number of Sequences: 28952
Number of extensions: 224499
Number of successful extensions: 1273
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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