Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0715
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 31 0.95
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 31 1.3
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 30 2.2
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 28 6.7
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 28 6.7
SB_46090| Best HMM Match : DUF1664 (HMM E-Value=2.4) 28 8.9
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 328 GSEANAVMVNPNSVMPSNFAETPVKSVVK-EEASNVLLSSVANRDSESKHNSTLASPKEE 504
G +A V+P V + + TP KS+ EEAS L +VA+ + +H+ SP++
Sbjct: 1237 GINPDASSVSPRKVARQSESSTPKKSISPLEEAS---LKTVASPKKDIQHSEQSISPRKN 1293
Query: 505 KIT*H 519
+ T H
Sbjct: 1294 RRTVH 1298
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P +
Sbjct: 575 SVVFDSTTPNATTLVQSISASISPNVTINMTREANSTMIFPSTSVPYNTTLIPAPNATST 634
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 635 AATTMSPSYVAN 646
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P +
Sbjct: 464 SVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLIPAPNATST 523
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 524 AATTMSPSYVAN 535
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N +T + + S+S N+ + + EAN+ M+ P++ +P N P +
Sbjct: 665 SVVFDSTTPNATTLVPSISASISPNVTINMTREANSTMILPSTSVPYNTTLIPAPNATST 724
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 725 AATTMSPSYVAN 736
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNNSSSFVH-NLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N + + +SS+ + N+ + + EAN M+ P++ +P N P +
Sbjct: 62 SVVVDSTTPNATRLVPSSSASISPNVTINMTREANITMILPSTSVPYNTTLIPAPNATST 121
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 122 AATTMSPSYVAN 133
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNN-SSSFVHNLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N +T + + ++S N+ + + EAN+ M+ P++ +P N P +
Sbjct: 263 SVVFDSTTPNATTLVPSITASISPNVTINMTREANSTMILPSTSVPYNTTLIPAPNATST 322
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 323 AATTMSPSYVAN 334
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNNSSSFVH-NLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N + + +SS+ + N+ + + EAN+ M+ P++ +P N P +
Sbjct: 62 SVVVDSTTPNATRLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTLIPAPNATST 121
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 122 AATTMSPSYVAN 133
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 244 ATVTDMDTDNCSTWLNNSSSFVH-NLDLYGS-EANAVMVNPNSVMPSNFAETPVKSVVKE 417
+ V D T N + + +SS+ + N+ + + EAN+ M+ P++ +P N P +
Sbjct: 665 SVVVDSTTPNATRLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTFIPAPNATST 724
Query: 418 EASNVLLSSVAN 453
A+ + S VAN
Sbjct: 725 AATTMSPSYVAN 736
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 113 SDMDLYITDSLQDMLDIDIKNEIATDLSSISD 208
SD+ + + D LQ+M D+D NE S++ D
Sbjct: 432 SDISIAVIDLLQEMTDVDTLNESKEGASALID 463
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 500 SFGLASVELCFDSESLLATDERRTFDASSLTTL 402
S LAS+E F ++ A+DE R FD+ +T L
Sbjct: 552 SITLASIENLFKAKITQASDELRAFDSDLITRL 584
>SB_46090| Best HMM Match : DUF1664 (HMM E-Value=2.4)
Length = 140
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 164 DIKNEIATDLSSISDFQDSFGTNFSDMPPLPTW-TLIIALRG*ITVPVLFII 316
DI+ +I +ISDFQD F +P L +L +AL G I P+ I+
Sbjct: 52 DIQKDIKFLRETISDFQDRFSEVKIVIPVLKKLSSLRLALEGEIVFPIFKIV 103
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 164 DIKNEIATDLSSISDFQDSFGTNFSDMPPLPTW-TLIIALRG*ITVPVLFII 316
DI+ +I +ISDFQD F +P L +L +AL G I P+ I+
Sbjct: 47 DIQKDIKFLRETISDFQDRFSEVKIVIPVLKKLSSLRLALEGEIVFPIFKIV 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,880,794
Number of Sequences: 59808
Number of extensions: 406979
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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