Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0715
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    30   1.8  
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3...    28   7.2  
At1g08800.1 68414.m00979 expressed protein weak similarity to SP...    28   7.2  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   9.6  

>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 468 ETQFNASQSKRRKNHLTFSPNTIKVSKVHENRGNKNKKGTRR 593
           E ++N    +RR+ +  F   T K   V   RGN+ K G +R
Sbjct: 70  EMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKR 111


>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
           contains Pfam profile: Myb DNA-binding proteins;
           identical to cDNA putative c-myb-like transcription
           factor (MYB3R3) GI:15375285
          Length = 505

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +3

Query: 486 SQSKRRKNHLTFSPNTIKVSKVHENRGNKNKKGTRRGEGRWYLRKNKTTKTVVQRFY*KD 665
           S     K+    SP T  VS  H   G +     RR +G W   +++T +  V  F  K 
Sbjct: 44  SAGSSHKSPTIASPAT--VSPTHRYLG-RTSGPIRRAKGGWTPEEDETLRQAVDTFKGKS 100

Query: 666 WINL 677
           W N+
Sbjct: 101 WKNI 104


>At1g08800.1 68414.m00979 expressed protein weak similarity to
           SP|Q02455 Myosin-like protein MLP1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF04576: Protein of
           unknown function, DUF593
          Length = 1113

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 361 NSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNSTLASPKEEKI 510
           +S +  +F E P  + + EE   + L+ V +     +H++     KEE +
Sbjct: 562 DSSLTPDFKENPASTFLVEETELICLNDVTSPSRAMEHSTVFIEEKEELV 611


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 343 AVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVA 450
           +V+ +P SV P++ A +PV + +  EAS  +L++ A
Sbjct: 173 SVVPSPVSVHPTSVAPSPVSACLTSEASKPVLANPA 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,687
Number of Sequences: 28952
Number of extensions: 286056
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)