Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0713
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26260.1 68418.m03133 meprin and TRAF homology domain-contain...    28   4.6  
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea...    28   6.1  
At4g21220.1 68417.m03069 bacterial transferase hexapeptide repea...    27   8.1  

>At5g26260.1 68418.m03133 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 351

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 237 IAIKLFMGIATLPSYLGTKAGKKRQYNPRXPRKWGFKNLV 118
           + +KLF+    L  YL    G  ++YN    ++WGF  L+
Sbjct: 130 VDLKLFVHNRKLKKYLSVTDGTVKRYND-AKKEWGFTQLI 168


>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
           repeat-containing protein similar to SP|P32203
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) {Yersinia
           enterocolitica}; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 299

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 272 NVLILGPNTCLYIHKFQKIVLLEKSRRNNLGPSLHQVLGGKTCHFLYQ 415
           N + +G NTC+    ++  V+ + ++ +NL    H V+ GK C F  Q
Sbjct: 183 NRVEIGANTCIDRGSWRDTVIGDDTKIDNLVQIGHNVIIGKCCLFCGQ 230


>At4g21220.1 68417.m03069 bacterial transferase hexapeptide
           repeat-containing protein similar to
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) (FirA protein)
           {Escherichia coli} SP|P21645; contains Pfam profile
           PF00132: Bacterial transferase hexapeptide (three
           repeats)
          Length = 304

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 272 NVLILGPNTCLYIHKFQKIVLLEKSRRNNLGPSLHQVLGGKTC 400
           N + +G NTC+    +++ V+ + ++ +NL    H V+ GK C
Sbjct: 182 NRVEIGANTCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCC 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,274
Number of Sequences: 28952
Number of extensions: 290483
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)