Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0711
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12623| Best HMM Match : NAD_kinase (HMM E-Value=1.5e-09)            57   1e-08
SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)                  33   0.24 
SB_31838| Best HMM Match : CXCXC (HMM E-Value=0.7)                     31   1.3  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                30   1.7  
SB_55792| Best HMM Match : Cucumo_coat (HMM E-Value=4.3)               30   2.2  
SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 30   2.2  
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          29   2.9  
SB_11160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  

>SB_12623| Best HMM Match : NAD_kinase (HMM E-Value=1.5e-09)
          Length = 155

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = +2

Query: 494 LGLVGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVLR 616
           LG +GFLT F F+ F+E V  VL+GHA LTLRSRL+C++ +
Sbjct: 11  LGSLGFLTSFRFDRFREHVTKVLDGHARLTLRSRLRCIITK 51



 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 465 QSVPPVMAFHLGSLG 509
           +S PPV+AFHLGSLG
Sbjct: 1   ESCPPVLAFHLGSLG 15


>SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 390 LTDKIDFIICLGGDGTLLHASSLFQQSVPPVMAFHLGSLG 509
           L +  D +I +GGDG++L A+    +   PV+  + GSLG
Sbjct: 59  LGEVCDLVIVVGGDGSMLGAARALARHKVPVLGVNRGSLG 98



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 485 GVPLGLVGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVLRKSQ 625
           GV  G +GFLT    +  + +V  VLEGH     R  L+  V R  +
Sbjct: 91  GVNRGSLGFLTDIRPDELEVKVAQVLEGHYLTENRFLLEAEVRRNGE 137


>SB_31838| Best HMM Match : CXCXC (HMM E-Value=0.7)
          Length = 346

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 182 SLPSPCWSSRRFTTPRYWHP-SFS*SLARS*QKHGGVRRGGSFRRHTPC*VWRLYVGEGT 358
           S P P    R F+TP++    S++   + S + H  V R    R+H+P  V R YV E  
Sbjct: 202 SEPLPRTKPRLFSTPKFSSSHSYARVSSPSEEIHDRVER--IIRKHSPLPVSRSYVEESD 259

Query: 359 SDD 367
           SDD
Sbjct: 260 SDD 262


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 538 KVVELEGRQKPNEPKWNAITGGTDCWKSELACNRVPSPPRHMMKSILSVRS 386
           K  E E   KP  PK + + GG+    SE     +P PP   +++ L V S
Sbjct: 298 KQEEKETSSKPKPPKLSIVKGGSMAIGSEEMTQPIPGPPLTGIQTPLKVNS 348


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 122 KIPPWSCKSRIRRRRG*PGTSLPSPCWSSRRFT 220
           K+PP +C +R++  R  P T     C+SS RFT
Sbjct: 586 KLPPSTCVARVQVTREAPITDGTLSCFSSERFT 618


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -3

Query: 437 SSITPQAYDEVDLISEIIGASSES----HQTFLHRRKVSILSKECVV*NCRLDEHHHAFV 270
           S I  +A   + L+ +  GA+SE+    +Q+ +  R+V ILS++C+     +++  HA V
Sbjct: 80  SEIHREANKVLGLLQDFSGAASEAQARANQSLIRAREVEILSQQCINNVSAVNQSTHAAV 139

Query: 269 M 267
           +
Sbjct: 140 L 140


>SB_55792| Best HMM Match : Cucumo_coat (HMM E-Value=4.3)
          Length = 237

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -1

Query: 556 VHDLLLKVVELEGRQKPNEPK---WNA-ITGGTDCWKSELACNRVPSPPRHMMKSILSVR 389
           VH +L    + + RQ+  +PK   +NA I G T CWK+    +R+       ++   + R
Sbjct: 32  VHTILSTDTKCQ-RQRGMDPKNIPYNALIVGPTSCWKTRFIVDRLRLSYSTTVRPQKTAR 90

Query: 388 SSVLALKVIRRSFTDVKSPY 329
              +++ VI +  T +  P+
Sbjct: 91  HVDISVWVITQQHTSITKPF 110


>SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +1

Query: 373 ELAPMISLIRSTSSYAWGVMELCCMLVHFSS--NQCRR*WRSTWARWVS-DALRVQQLSG 543
           E+A +I+L  +    AW  +E+CC++ + S+  N+       TW  W + ++L   ++  
Sbjct: 180 EIACIIALSDTCKFDAWKDLEVCCIVTNMSAHYNKSSGSIEVTWDTWCNKESLAGAEILW 239

Query: 544 ASHERFRRTRGS 579
           AS +  ++  GS
Sbjct: 240 ASIQDTQKCHGS 251


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -3

Query: 437  SSITPQAYDEVDLISEIIGASSES----HQTFLHRRKVSILSKECVV*NCRLDEHHHAFV 270
            S I  +A   + L+ +  GA+SE+    +Q+ +  R+V ILS++C+     +++  HA V
Sbjct: 1459 SEIHREANKVLGLLQDFRGAASEAQARANQSLIRAREVEILSQQCINNVSAVNQSTHAAV 1518

Query: 269  M 267
            +
Sbjct: 1519 L 1519


>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 144 NPGSGVAEADLVQASPHRAGHQEGSRRPDTGTLRSASHWLVHDKS 278
           N   G+ ++D++  S   A      RRP+ G L + +HW    +S
Sbjct: 129 NTPVGLEKSDIIPDSRFTASSYYRDRRPEHGRLNNRNHWAAASES 173


>SB_11160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 451 LACNRVPSPPRHMMKSILS 395
           LAC RVP P  H ++SILS
Sbjct: 51  LACRRVPRPTSHSIESILS 69


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 95  SLDHAAGL*KIPPWSCKSRIRRR 163
           SL+ AAG  ++PP +C +R+R++
Sbjct: 18  SLESAAGSKRLPPRACSNRVRKK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,203,915
Number of Sequences: 59808
Number of extensions: 490728
Number of successful extensions: 1247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)