Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0708
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         32   0.35 
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_52618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   7.6  
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)                   28   7.6  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 82  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAM 246
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSM 63


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -3

Query: 352 RVNVTGASGNSMSRR--TCLDSPTFNTATGSFTASVVTWLPPVS-----HLIHLVW 206
           R +V     N++SRR     D+ T +     F +SVV WLPP +     H +  VW
Sbjct: 207 RYDVNAIKSNTVSRRIEVAQDNNTSHFGRYHFCSSVVEWLPPFTASERFHSMQKVW 262


>SB_52618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 352 RVNVTGASGNSMSRR--TCLDSPTFNTATGSFTASVVTWLPP 233
           R +V     N++SRR     D+ T +    +F +S V WLPP
Sbjct: 157 RYDVNAIKSNTVSRRIEVAKDNTTSHFGRYNFCSSAVEWLPP 198


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 187
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 275 DW*FYCFCS-DMASTCITFNSSGLASGPNNA*RMTSLLLRG 156
           DW F    + D+   CI+ + + + +GP +  R TS L+RG
Sbjct: 151 DWAFNPHTNQDLVMICISIDDTNIENGPVDWDRFTSTLVRG 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,078
Number of Sequences: 59808
Number of extensions: 339263
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)