Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0708
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14680.1 68415.m01651 myosin heavy chain-related contains wea...    29   3.6  
At3g58050.1 68416.m06471 expressed protein                             28   4.7  
At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    28   4.7  

>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P35579 myosin heavy chain,
           nonmuscle type A (Cellular myosin heavy chain, type A,
           Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
          Length = 629

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 66  NHHDGRVF-LWCHPFIITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTGG- 239
           N  DGR+  +W   +I   + D  SRG S + T+     +    R + +   IK +    
Sbjct: 470 NEKDGRLKNMWKKSYINRWI-DPSSRGGSHLNTEADYASNIEYSRMKVEYAAIKENLESM 528

Query: 240 SHVTTEAVKLPVAVLKVGE 296
            H+TT   +L +A+LKV E
Sbjct: 529 GHLTTSIRRLRLALLKVKE 547


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 100 TLSSSHQSETWDPEAKAEYPRSN 168
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -3

Query: 361 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASVVTWLPPVSHLIHLVWHLDL 194
           P  R     + G +MS   C  SP F            T +P V H   + W L L
Sbjct: 502 PENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDISWGLKL 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,846
Number of Sequences: 28952
Number of extensions: 240048
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)