Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0706
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 8e-14
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 61 5e-10
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 50 2e-06
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 36 0.021
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16) 33 0.11
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 0.78
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1) 29 3.1
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 29 3.1
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) 28 5.5
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 28 5.5
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_32625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 73.7 bits (173), Expect = 8e-14
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +2
Query: 278 VVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIGLNADYSSFGRR 457
VV+R+D+FIT+KLWNT+H +V DSLK LGLDY+DLYL+HWP+ F +
Sbjct: 65 VVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSFRDGDEFFPKD 124
Query: 458 LHGDL 472
G++
Sbjct: 125 EQGNV 129
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +3
Query: 63 SLKMNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIXVGYRHFDTASVYETEQE 242
++K+NNG +MP +GLGT+ KSK Q+ + V AI GYRH D A Y E+E
Sbjct: 3 TVKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKE 53
Query: 243 IGEA 254
+G+A
Sbjct: 54 VGDA 57
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +2
Query: 251 SLKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 421
+L + EG VKRE++F+T+KLW H +V A +LK L LDY+DLYL+H P+
Sbjct: 97 ALSEVLTEGKVKREELFVTSKLWCDSHHPDDVLPACQATLKNLQLDYLDLYLIHIPV 153
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 144 KSKDKQLRDVVMRAIXVGYRHFDTASVYETEQEIGEA 254
+S +++ + V AI +GYRH D A +Y E EIGEA
Sbjct: 61 QSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEA 97
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 281 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 421
+ R +I++ TK++ T+H E A SL +LGL Y+DLYL+H+P+
Sbjct: 124 IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPV 170
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +3
Query: 72 MNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIXVGYRHFDTASVYETEQEIGE 251
MN+GR +P +GLG + D + V+ A+ GYR DTAS Y EQ +GE
Sbjct: 70 MNDGRKIPLLGLGAH------------DIHSKQAVLWALESGYRLIDTASRYHNEQSVGE 117
Query: 252 A 254
A
Sbjct: 118 A 118
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +2
Query: 266 VEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWP 418
V + +KREDI++TTKL ++ + + +S+KKL + Y+DL+L+H P
Sbjct: 77 VRKSGLKREDIYVTTKLKPSEEGHSNALKYAKESIKKLDIGYVDLFLIHTP 127
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 168 DVVMRAIXVGYRHFDTASVYETEQEIGEA 254
DV + A+ GYR DTA +Y+ E+E+G A
Sbjct: 48 DVCLFALKNGYRMLDTADIYQNEKEVGSA 76
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 266 VEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMH 412
+ + + R+DIFI TKL +++ SL+ L DYIDL+L+H
Sbjct: 383 IADSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIH 431
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 72 MNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIXVGYRHFDTASVYETEQEIGE 251
+++G +P GLG Y +K + V+ A+ GYR DTA+ Y E+ +GE
Sbjct: 3 LSDGYKIPRFGLGLY---------DLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGE 53
Query: 252 A 254
A
Sbjct: 54 A 54
>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
Length = 195
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 365 SLKKLGLDYIDLYLMHW 415
SL++LG+D IDLYL+HW
Sbjct: 51 SLERLGIDRIDLYLLHW 67
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 202 VISIPPPFTKLNKKLEKPEDEGRGRSRQKR 291
+ S+PPPF K KK E E+ R R ++KR
Sbjct: 889 IFSVPPPFRK-KKKEEAKEERQRQRQKKKR 917
>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 359 NDSLKKLGLDYIDLYLMHWPIGLNADYSSF-GRRLHGDLARIGXCSANGYSK 511
+D +K + D Y+ HW +GL DY+ G L ++ R G+SK
Sbjct: 233 DDYIKHWEMGLTDDYIKHWEMGLTDDYTKHCGMGLTDNVFRSNQKGPQGHSK 284
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 359 NDSLKKLGLDYIDLYLMHWPIGLNADYS 442
+D +K + D Y+ HW +GL DY+
Sbjct: 173 DDYIKHWEMGLTDDYIKHWEMGLTDDYT 200
>SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1)
Length = 406
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -3
Query: 94 GMSLPLFIFNEGTSIVDASPSPHRDST 14
G+ L + +F+ TSI+++ P+P+R+ T
Sbjct: 234 GVGLEIKVFSSCTSILNSKPNPYREKT 260
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 506 YTHSLSIXQSSPGL-HEVYVRMNYNRHLIQW 417
YT + + + L ++VRMN+N HL++W
Sbjct: 65 YTQVVDLIEKDQVLISNIWVRMNWNNHLLRW 95
>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
Length = 895
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 437 YSSFGRRLHGDLARIGXCSANGYS 508
YS F RRLHG + C +GYS
Sbjct: 606 YSMFTRRLHGVYSTFTRCLLDGYS 629
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -1
Query: 201 GIRHXWRALQHHGAACPWTSLRRSDQTQGTCPGRWRAC 88
G+RH L+ C W RR CP ++C
Sbjct: 125 GLRHSQMKLRREPGTCFWCGDRRGPHPWKECPANGKSC 162
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 235 NKKLEKPEDEGRGRSRQKRRYLYHY*AVEYPAPEN*SSPSYKRFTEETRSGLYRSLFDAL 414
N + +KP GRGRS KR Y+ P + + S + F + + G RS DA+
Sbjct: 22 NAEKKKPAGFGRGRS--KRGYVNGNYEARRPGERSYGTRSVQNFGNQRQGGFQRS-EDAM 78
Query: 415 A-HW 423
A +W
Sbjct: 79 AENW 82
>SB_32625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 431 ADYSSFGRRLHGDLARIGXCSANGYSKGIGLS 526
A+Y+SFGRR+ D ARI + S G G++
Sbjct: 81 ANYNSFGRRIAWDWARINLANITA-SFGAGMA 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,963
Number of Sequences: 59808
Number of extensions: 335022
Number of successful extensions: 991
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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