Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0704
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24930.1 68418.m02952 zinc finger (B-box type) family protein...    28   2.7  
At4g23440.1 68417.m03379 expressed protein                             28   3.6  
At1g09910.1 68414.m01115 expressed protein                             27   4.8  

>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
           similar to CONSTANS-like protein 1 GI:4091804 from
           [Malus x domestica]
          Length = 406

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 279 LCISLKTRMQKTVKASSRHAEDW-----SQAPVFVRRQGTSAQLEPLCVLDFY 422
           LC+S  +++    K +SRHA  W      QAP  V  +  +A L   C  D +
Sbjct: 69  LCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIH 121


>At4g23440.1 68417.m03379 expressed protein 
          Length = 964

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 169  QDSLSKLIDVLENIHQLHKAS 231
            +++LSKL  +L N+HQ+H  S
Sbjct: 943  RETLSKLTRLLSNVHQIHNTS 963


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 309 KTVKASSRHAEDWSQA--PVFVRRQGTSAQLEPLCVLD 416
           KT+     H E W +   PVF+    T+   +PLC+ D
Sbjct: 309 KTMMPRFEHGEPWKKVYGPVFIYLNSTANGDDPLCLWD 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,102,959
Number of Sequences: 28952
Number of extensions: 196485
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)