Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0698
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 8e-19
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.025
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.025
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.18
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 33 0.18
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.23
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.40
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 32 0.53
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.53
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011) 31 0.71
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.71
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 31 0.93
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 1.2
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 31 1.2
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 30 1.6
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 30 2.2
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 29 2.8
SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.8
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 5.0
SB_49419| Best HMM Match : SCP (HMM E-Value=5e-14) 29 5.0
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 5.0
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 91.1 bits (216), Expect = 8e-19
Identities = 46/83 (55%), Positives = 59/83 (71%)
Frame = +3
Query: 255 RVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAY 434
R++AE AK LD R RTLRVRFA H +A+RVKNL V+NELL ++F FG +ERA
Sbjct: 97 RLHAEAAKAGLDMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAV 156
Query: 435 VKVDERGKTLGEGVVEFARKPSA 503
V D RG++ G G+VEF+RK +A
Sbjct: 157 VVCDVRGRSKGHGIVEFSRKNNA 179
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +1
Query: 100 EVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
E KF GR RL++GNL D EEE+ +MF +GE +E+F+NKEK FGFI++D
Sbjct: 46 ERKFTGRCRLFVGNLI-DCDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLD 95
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 58 LQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-KNF 234
+QG L ++ + + + + N +L++G L TE+ +M+ F+ FGE +++++ K ++F
Sbjct: 179 IQGRLCEVR-LPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHF 237
Query: 235 GFI 243
GF+
Sbjct: 238 GFV 240
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
L++ N+ + E++I ++FS +GE L +N ++ GFIK
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIK 334
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +1
Query: 115 GRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIK 246
G +RLY+G+L ++TE + +F PFG + L N+ K +GF++
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQ 289
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE------KNFGFI 243
P +EQ E + +R+YI ++ D+ E++I +F FG+ L+KE K +GFI
Sbjct: 186 PLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFI 245
Query: 244 KMD 252
+ +
Sbjct: 246 EYE 248
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLN------KEKNFGFIKMD 252
R+Y+G++ ++ EE I F PFG +++ L+ K K F F++ D
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
+Y+GNL DV + E+ +MFS +G E + +K + FI
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFI 655
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEAS 204
P M++ + N +++G+L +V + K F PFGE S
Sbjct: 447 PGMKRGDT--NNHFHIFVGDLAENVDNALLRKTFEPFGEIS 485
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 330 APHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSAL 506
AP S V V NLP ++N L++ FE +GK+ + + D E ++ G + F + SA
Sbjct: 6 APSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQ 65
Query: 507 SQFVTAQK 530
+ K
Sbjct: 66 NAVAAVNK 73
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 118 RSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+S +Y+GNL +T ++ K+F +G+ ++ + ++K
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
R+Y+G L TE+++ + F +G + +N + N+GF++ +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRD--INLKNNYGFVEFE 44
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 37 LSNKLKDLQGPLFDLPPMEQSEVKFNGRSR--LYIGNLTNDVTEEEIMKMFSPFGEASEL 210
L +L LQGP ++ F + ++IG L+ DVTE ++++F+ FG ++
Sbjct: 494 LFRQLPSLQGPCIAFWVFQEVNEGFKMAASFPVWIGGLSEDVTENVLLELFNKFGPVKDV 553
Query: 211 FLNKEKN 231
+ ++++
Sbjct: 554 VILRDES 560
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 33.1 bits (72), Expect = 0.23
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 342 SAVRVKNLPPFVSNELLYRSFEIFGKIERAY-VKVDERGKTLGEGVVEFARKPSALSQFV 518
+ V+++ LP S E + + F + + +DE GKT GEG VEFA P Q
Sbjct: 38 AVVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFA-SPEIAGQ-- 94
Query: 519 TAQKNVSS*HHPYAQSLLKALKN 587
QK+ H Y + + K+ K+
Sbjct: 95 AMQKHKEKIGHRYIE-IFKSSKS 116
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 91 EQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+ S K + +SRL I NL + TE + + FS FGE SE + ++K
Sbjct: 237 KSSSPKGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKK 282
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 342 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYV--KVDERGKTLGEGVVEFARKPSAL 506
+ + V+NLP +++ +FE G ++R ++ D + + G G V FA + AL
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDAL 76
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 246 NGLRVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIE 425
NG + + K ++ K ++S + S + ++NL + +L +F FG++
Sbjct: 219 NGKTLKGVKVKAVIESKDKSSSPKGSK----KSRLIIRNLAFNCTEAILKETFSAFGEVS 274
Query: 426 RAYV---KVDERGKTLGEGVVEF 485
A V KV R + +G G V+F
Sbjct: 275 EASVPQKKVGRRNRKMGFGFVQF 297
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKM 249
+++ L + T + K+FSP+G + + L +K +GF+ M
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNM 314
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGE 198
+ LYI L D+ EEE+ +F PFG+
Sbjct: 113 ANLYISGLPKDMKEEEVEALFKPFGK 138
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
R+Y+GNL DV E+++ +F +G +++ L + G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG 299
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASEL 210
+L++G ++ EE++ MFSPFG EL
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEEL 243
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 97 SEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD*EL 261
+ V+ + +L++G + E+++ +F P+G+ EL + K+K G K D +L
Sbjct: 162 TSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKDDRKL 216
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIK 246
S L++GNL + TE + + SP+G LFL K +GF++
Sbjct: 113 SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVE 160
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 106 KFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-----KNFGFI 243
+F G + LYI NL + + +E + + FSP+G S + K+ K FGF+
Sbjct: 208 RFQGVN-LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFV 257
>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
Length = 468
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 491 QTKCLIAIRNCTEKCFFLTSSLRPVIVESFEE 586
Q C+ + NCT KC + SS+ + VESF++
Sbjct: 411 QNTCIARVTNCTAKC--VCSSITQIYVESFDD 440
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 100 EVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASEL-----FLNKEKNFGFI 243
+++ N RS +++G L + EE + F FGE + FL +N+GF+
Sbjct: 74 DIEKNSRS-VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFV 125
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
LY+G L VTE+++ F FGE + + +N F+
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFV 344
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 133 IGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+ NL+ + E ++ ++F P G S +FL K+K
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDK 216
>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 417 KIERAYVKVDERGKTLGEGVVEFARKPSALSQFVTAQKNVSS*HHP 554
K RA V +D R +T+ E + + P+ + FVT VS+ H P
Sbjct: 99 KTIRALVCLDTREETVKETFIHVIQAPAVMEVFVTTHTKVSTTHAP 144
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 94 QSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
Q + R++L++G L + T E + + F +GE +++ + K + FG++
Sbjct: 5 QENTNNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYV 60
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-KNFGFIKMD 252
++LY+GNL + E+ + F FG S++++ + F F++ +
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYE 48
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 58 LQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
L+ P D+P +Q E K G ++IG L + E I ++F GE + + ++K K
Sbjct: 331 LEPPPPDMPMQKQKE-KPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGK 386
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFG-EASELFLNKE----KNFGFI 243
N +LYIGNL + E EI + F FG E ++ +KE + FGF+
Sbjct: 6 NRGRKLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFV 54
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEAS 204
+++IG L+ + +EE++ K FS FG+ S
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +1
Query: 130 YIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIKMD 252
Y+G L +V E+ + F PFG+ +++ + +K + FGF++ +
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFE 54
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++IG L N + E+++ ++ S FGE L K+ G K
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSK 714
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 339 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARK 494
N +V V+NL S + L F +GK+ A D K +GEGVVEF K
Sbjct: 797 NYSVIVENLSSRTSWQDLKDYFRKYGKVTYA----DAHKKRIGEGVVEFESK 844
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASE 207
+L++G L D TEE + F F E SE
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSE 36
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGFIKMD 252
L++GNL D+T E+++ F G +S L N K GF+++D
Sbjct: 76 LFVGNLPFDLTTEKVLDHFRCAGSSSFRLLTKKTDNSSKGCGFLEID 122
>SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 160 EEEIMKMFSPFGEASELFLNKEKNFGFIKMD*ELMQREQNV 282
E++ + F+P+GE +F+ + FI D + + RE+++
Sbjct: 424 EQKFLADFAPYGEVKWMFIRSDNRGEFISDDYQALLRERSI 464
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
SRL+I + + +FS FG ++++ KE+NFG+ K
Sbjct: 338 SRLFIVCNPAPPPDHVLKDVFSRFGNLIDVWMMKERNFGYAK 379
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL 216
SR+YIGN+ ++ ++ EI + F FG ++++
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWV 33
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASEL 210
L++GNL ++ EE+I+K F+ +G +
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 546 HHPYAQSLLKALKNPMXSMDILKRIFPRNIQNFTK 650
HHPYA+++ L+ P L P I N+ K
Sbjct: 132 HHPYAENIFAKLEAPASIPKRLHEYSPEEISNYPK 166
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIKM 249
++L++G + + ++ + K F+ FGE E + K K +GF+ M
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTM 58
>SB_49419| Best HMM Match : SCP (HMM E-Value=5e-14)
Length = 555
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 321 VRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGK--IERAYVKVDERGKTLGEGVVEFARK 494
+ A HN +V N PP NELL + + + + Y++ G+ GEG+ E
Sbjct: 396 IALALHNRFRQVHNSPPMTLNELLSDAARQYAEKLAQLGYLEDSPEGE--GEGIGENLSM 453
Query: 495 PSALSQFVTAQKNVS 539
++ Q T ++ +S
Sbjct: 454 GCSVDQGETTEEGIS 468
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 354 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSQFVTAQK 530
V NLP + F G +++ + + GK G G VE+ ++ SA + +T K
Sbjct: 175 VSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDK 233
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+R+Y+G L E+++ K F +G + + +GF++ D
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFD 46
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 LYIGNLT-NDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
LY+G LT + EE + + F +GE ++ + +KN F++
Sbjct: 249 LYVGGLTLHTKLEEWLWEEFGEWGEIEDIRIIPKKNIAFVR 289
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 369 PFVSNELLYRSFEIFGKIERAYVKVDERGKT---LGEGVVEFARKPSALSQF 515
P V +++ + SFE+ + R VKV+ +G+T E VV A +P ++
Sbjct: 81 PGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGRPKVKVEY 132
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,924,165
Number of Sequences: 59808
Number of extensions: 392810
Number of successful extensions: 902
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -