Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0697
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 6e-13
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 7e-04
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.007
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.012
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.012
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.084
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 33 0.084
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.19
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 32 0.26
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.26
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.34
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 31 0.45
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 0.59
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 31 0.59
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 30 0.78
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.78
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 29 1.4
SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 1.8
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 2.4
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 2.4
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 27 5.5
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 27 7.3
SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 70.5 bits (165), Expect = 6e-13
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +3
Query: 255 RVNAERAKRELDGKLRNSRTLRVRFAPHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAY 434
R++AE AK LD R RTLRVRFA H +A+RVKNL V+NELL ++F FG +ERA
Sbjct: 97 RLHAEAAKAGLDMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAV 156
Query: 435 VKVDER 452
V D R
Sbjct: 157 VVCDVR 162
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +1
Query: 100 EVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
E KF GR RL++GNL D EEE+ +MF +GE +E+F+NKEK FGFI++D
Sbjct: 46 ERKFTGRCRLFVGNLI-DCDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLD 95
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 58 LQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-KNF 234
+QG L ++ + + + + N +L++G L TE+ +M+ F+ FGE +++++ K ++F
Sbjct: 179 IQGRLCEVR-LPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHF 237
Query: 235 GFI 243
GF+
Sbjct: 238 GFV 240
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.1 bits (82), Expect = 0.007
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
L++ N+ + E++I ++FS +GE L +N ++ GFIK
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIK 334
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +1
Query: 115 GRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIK 246
G +RLY+G+L ++TE + +F PFG + L N+ K +GF++
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQ 289
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE------KNFGFI 243
P +EQ E + +R+YI ++ D+ E++I +F FG+ L+KE K +GFI
Sbjct: 186 PLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFI 245
Query: 244 KMD 252
+ +
Sbjct: 246 EYE 248
Score = 33.5 bits (73), Expect = 0.084
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLN------KEKNFGFIKMD 252
R+Y+G++ ++ EE I F PFG +++ L+ K K F F++ D
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.9 bits (79), Expect = 0.016
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
+Y+GNL DV + E+ +MFS +G E + +K + FI
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFI 655
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 82 PPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEAS 204
P M++ + N +++G+L +V + K F PFGE S
Sbjct: 447 PGMKRGDT--NNHFHIFVGDLAENVDNALLRKTFEPFGEIS 485
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.5 bits (73), Expect = 0.084
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
R+Y+G L TE+++ + F +G + +N + N+GF++ +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRD--INLKNNYGFVEFE 44
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 33.5 bits (73), Expect = 0.084
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 37 LSNKLKDLQGPLFDLPPMEQSEVKFNGRSR--LYIGNLTNDVTEEEIMKMFSPFGEASEL 210
L +L LQGP ++ F + ++IG L+ DVTE ++++F+ FG ++
Sbjct: 494 LFRQLPSLQGPCIAFWVFQEVNEGFKMAASFPVWIGGLSEDVTENVLLELFNKFGPVKDV 553
Query: 211 FLNKEKN 231
+ ++++
Sbjct: 554 VILRDES 560
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 91 EQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+ S K + +SRL I NL + TE + + FS FGE SE + ++K
Sbjct: 237 KSSSPKGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKK 282
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKM 249
+++ L + T + K+FSP+G + + L +K +GF+ M
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNM 314
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGE 198
+ LYI L D+ EEE+ +F PFG+
Sbjct: 113 ANLYISGLPKDMKEEEVEALFKPFGK 138
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.19
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFG 237
R+Y+GNL DV E+++ +F +G +++ L + G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG 299
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASEL 210
+L++G ++ EE++ MFSPFG EL
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEEL 243
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 97 SEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD*EL 261
+ V+ + +L++G + E+++ +F P+G+ EL + K+K G K D +L
Sbjct: 162 TSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKDDRKL 216
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIK 246
S L++GNL + TE + + SP+G LFL K +GF++
Sbjct: 113 SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVE 160
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.9 bits (69), Expect = 0.26
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 106 KFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-----KNFGFI 243
+F G + LYI NL + + +E + + FSP+G S + K+ K FGF+
Sbjct: 208 RFQGVN-LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFV 257
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 100 EVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASEL-----FLNKEKNFGFI 243
+++ N RS +++G L + EE + F FGE + FL +N+GF+
Sbjct: 74 DIEKNSRS-VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFV 125
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFI 243
LY+G L VTE+++ F FGE + + +N F+
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFV 344
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 330 APHNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDE 449
AP S V V NLP ++N L++ FE +GK+ + + D+
Sbjct: 6 APSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 118 RSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+S +Y+GNL +T ++ K+F +G+ ++ + ++K
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 31.1 bits (67), Expect = 0.45
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 133 IGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
+ NL+ + E ++ ++F P G S +FL K+K
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDK 216
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 94 QSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFI 243
Q + R++L++G L + T E + + F +GE +++ + K + FG++
Sbjct: 5 QENTNNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYV 60
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKE-KNFGFIKMD 252
++LY+GNL + E+ + F FG S++++ + F F++ +
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYE 48
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 261 NAERAKRELDGKLRNSRTLRVRFA 332
+AE A RELDG RT+RV F+
Sbjct: 52 DAEEAVRELDGANVCDRTIRVEFS 75
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 58 LQGPLFDLPPMEQSEVKFNGRSRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEK 228
L+ P D+P +Q E K G ++IG L + E I ++F GE + + ++K K
Sbjct: 331 LEPPPPDMPMQKQKE-KPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGK 386
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 0.59
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 NGRSRLYIGNLTNDVTEEEIMKMFSPFG-EASELFLNKE----KNFGFI 243
N +LYIGNL + E EI + F FG E ++ +KE + FGF+
Sbjct: 6 NRGRKLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFV 54
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.7 bits (66), Expect = 0.59
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEAS 204
+++IG L+ + +EE++ K FS FG+ S
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +1
Query: 130 YIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIKMD 252
Y+G L +V E+ + F PFG+ +++ + +K + FGF++ +
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFE 54
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
+++IG L N + E+++ ++ S FGE L K+ G K
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSK 714
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGEASE 207
+L++G L D TEE + F F E SE
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSE 36
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASELFL-----NKEKNFGFIKMD 252
L++GNL D+T E+++ F G +S L N K GF+++D
Sbjct: 76 LFVGNLPFDLTTEKVLDHFRCAGSSSFRLLTKKTDNSSKGCGFLEID 122
>SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 160 EEEIMKMFSPFGEASELFLNKEKNFGFIKMD*ELMQREQNV 282
E++ + F+P+GE +F+ + FI D + + RE+++
Sbjct: 424 EQKFLADFAPYGEVKWMFIRSDNRGEFISDDYQALLRERSI 464
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
SRL+I + + +FS FG ++++ KE+NFG+ K
Sbjct: 338 SRLFIVCNPAPPPDHVLKDVFSRFGNLIDVWMMKERNFGYAK 379
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL 216
SR+YIGN+ ++ ++ EI + F FG ++++
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWV 33
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 127 LYIGNLTNDVTEEEIMKMFSPFGEASEL 210
L++GNL ++ EE+I+K F+ +G +
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFL------NKEKNFGFIKM 249
++L++G + + ++ + K F+ FGE E + K K +GF+ M
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTM 58
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 121 SRLYIGNLTNDVTEEEIMKMFSPFGEASELFLNKEKNFGFIKMD 252
+R+Y+G L E+++ K F +G + + +GF++ D
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFD 46
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 LYIGNLT-NDVTEEEIMKMFSPFGEASELFLNKEKNFGFIK 246
LY+G LT + EE + + F +GE ++ + +KN F++
Sbjct: 249 LYVGGLTLHTKLEEWLWEEFGEWGEIEDIRIIPKKNIAFVR 289
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGE 198
+L++G L+ + T+E + + FS +GE
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGE 54
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 124 RLYIGNLTNDVTEEEIMKMFSPFGE 198
+L+IGNL ++E I+K+ FGE
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGE 412
>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 1633
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 294 KLRNSRTLRVRFAPHN-SAVRVKNLPPFVSNELLYRSFEIFGKIER 428
K NSR+L+ R+ HN + V + F N++ YR E+F K ++
Sbjct: 64 KFYNSRSLKQRYERHNFNDFCVSSFEEF-ENDVCYRFEEVFRKKDK 108
>SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 397 RYNSSFETNGGRFFTRTALLCGANLTLRVLLFLNFPSNSR 278
R S E +G F R L CG ++ L F N+ S ++
Sbjct: 84 REQDSTEDDGRTFHLRRILYCGVYSRVQRLFFFNYQSGAK 123
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 154 VTEEEIMKMFSPFGEASEL-FLNKEKNFGFIKM 249
VTEEE+ MF G+ ++ FL K++ + M
Sbjct: 160 VTEEELTSMFEDCGDVADFRFLPKDRKMAHLSM 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,366
Number of Sequences: 59808
Number of extensions: 242573
Number of successful extensions: 504
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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