Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0696
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       63   1e-10
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    32   0.17 
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    30   0.89 
SB_44187| Best HMM Match : Dynein_heavy (HMM E-Value=2.1e-09)          30   0.89 
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)             28   2.7  
SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 27   4.8  
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_30299| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=8.1)           27   6.3  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               27   6.3  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               27   8.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = +3

Query: 237 HQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
           H + + IFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+L
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARL 86



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 29/98 (29%), Positives = 44/98 (44%)
 Frame = +1

Query: 124 EDSKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRN 303
           +D  K+P V E+ LK RK  E ++  R +  L ++     K++E  +      +    + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 304 VMKSD*PDKHAIVATTTFPGKPNWAFVIRIRGINQVSP 417
           V +               P +   AFVIRIRGIN VSP
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +1

Query: 121  KEDSKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASR 300
            K+ S+++  + E   + RK   +L+ +    T+ RR   +KKKRE +    S SRN    
Sbjct: 920  KDSSERIRLLQEKIKEMRKLYGSLKAE--VATIDRRRKRLKKKREVTDSFRSYSRNEIFF 977

Query: 301  NVMKSD 318
             V +SD
Sbjct: 978  WVTQSD 983


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 EAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVP 359
           + +      +G+   +E+Y    +I  RD   +AR+ R+RG YY+P
Sbjct: 460 DPYVYESSSDGVQSISEKYRSSGKI--RDTSSIARETRSRGPYYLP 503


>SB_44187| Best HMM Match : Dynein_heavy (HMM E-Value=2.1e-09)
          Length = 313

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 133 KKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNV 306
           +K P   E  +     +E +R  +L VT+++ +  + +  + SRG  S SRN   ++V
Sbjct: 256 EKYPVRYEESMNTVLVQEVIRYNKLLVTVRQTAERLAQGTQGSRGHVSGSRNHVEQSV 313


>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
          Length = 1220

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 207 TGYAKEAFFCHQEEEGIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 350
           TGY    F C +  +G FKR  Q   EY  +   +  + +  RNR  Y
Sbjct: 831 TGYHYGVFTC-EGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQY 877


>SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 130 SKKLPAVXESXLKHRKXREALRTKRLQV-TLKRRSSAIKKKRESSRGLNSTS 282
           ++K  AV E  L   K     +  RL V  LKRR+ A++ +RES++   S S
Sbjct: 276 TEKKQAVSEVTLSGLKPISKNQASRLLVRALKRRTDAVQLRRESNQETGSCS 327


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 112 VKGKEDSKKLPAVXESXLKHRKXREALRTKRLQVTL-----KRRSSAIKKKRESSR 264
           VKGK  SKK   + +  L   +  E LR +RL + L     K+  + +++ RE  R
Sbjct: 279 VKGKRMSKKDQRIIDLMLSRHEEAEQLRKERLMLDLEWDEQKQLENDLRQAREKQR 334


>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 121 KEDSKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKR-ESSRGLNSTSRN 288
           +E  + L    +S       R    TKR +   KRR S  K++R E+ R  + TS N
Sbjct: 220 EEAKQSLKEAKQSFEGSETKRRRSETKRRRSETKRRRSETKRRRSETKRRRSETSNN 276


>SB_30299| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=8.1)
          Length = 414

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 196 TKRLQVTLKRRSSAIKKKRESSRGLNSTSR----NTASRNVMKSD*PDKHAIVATTT 354
           +K+  V     SS+I  KR S  G   ++        SR+ +KSD  D+H++++ TT
Sbjct: 305 SKKSSVFEDSASSSIVSKRSSRTGQAGSASFCDSQYLSRSNVKSDASDRHSVLSKTT 361


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 375 PIWLPRERSSCHDCVLVWLV*FHHVP 298
           P+  P E S C  CVL WL  ++  P
Sbjct: 28  PLMAPCEHSYCSACVLGWLTHYNTCP 53


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 169 HRKXREALRTKRLQVTLKRRSSAIKKKRE 255
           HR  R   + KR+   +K RS A K+K+E
Sbjct: 453 HRNPRRVSKKKRVAEPIKSRSPAKKQKKE 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,787
Number of Sequences: 59808
Number of extensions: 161286
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)