Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0696
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 52 2e-07
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 52 2e-07
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 51 4e-07
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 50 6e-07
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 50 6e-07
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 50 6e-07
At1g62810.1 68414.m07091 copper amine oxidase, putative similar ... 31 0.42
At1g31690.1 68414.m03890 copper amine oxidase, putative similar ... 31 0.42
At1g31710.1 68414.m03891 copper amine oxidase, putative similar ... 30 0.55
At1g31670.1 68414.m03888 copper amine oxidase, putative similar ... 29 1.3
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 2.2
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 28 2.2
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ... 28 3.0
At4g12280.1 68417.m01946 copper amine oxidase family protein con... 28 3.0
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 28 3.0
At5g28320.1 68418.m03438 expressed protein This is likely a pseu... 27 6.8
At2g28010.1 68415.m03394 aspartyl protease family protein contai... 27 6.8
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 26 9.0
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 26 9.0
At4g17970.1 68417.m02675 expressed protein contains Pfam profile... 26 9.0
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL
Sbjct: 49 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKL 88
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL
Sbjct: 44 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKL 83
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 50.8 bits (116), Expect = 4e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL
Sbjct: 44 IFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKL 83
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 50.0 bits (114), Expect = 6e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKL 85
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 50.0 bits (114), Expect = 6e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKL 85
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 50.0 bits (114), Expect = 6e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL
Sbjct: 46 IFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKL 85
>At1g62810.1 68414.m07091 copper amine oxidase, putative similar to
copper amine oxidase [Cicer arietinum]
gi|3819099|emb|CAA08855
Length = 712
Score = 30.7 bits (66), Expect = 0.42
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 408 LVDTTDSDDKCPIWLPRERS-SCHDCVLVWLV*FHHVP 298
L+ + DD +W R+RS D VL + + FHHVP
Sbjct: 627 LIYQSQGDDTLQVWSDRDRSIENKDIVLWYTLGFHHVP 664
>At1g31690.1 68414.m03890 copper amine oxidase, putative similar to
copper amine oxidase [Lens culinaris]
gi|15451834|gb|AAB34918
Length = 420
Score = 30.7 bits (66), Expect = 0.42
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 402 DTTDSDDKCPIWLPRERSSCHDCVLVW-LV*FHHVP 298
D + DD +W R+R + +++W V FHHVP
Sbjct: 338 DRSQGDDTLAVWSQRDREIENKDIVMWYTVGFHHVP 373
>At1g31710.1 68414.m03891 copper amine oxidase, putative similar to
copper amine oxidase [Lens culinaris]
gi|15451834|gb|AAB34918
Length = 681
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 402 DTTDSDDKCPIWLPRERSSCHDCVLVW-LV*FHHVP 298
D + DD +W R R + +++W V FHHVP
Sbjct: 599 DRSQGDDTLAVWSQRNRKIEKEDIVMWYTVGFHHVP 634
>At1g31670.1 68414.m03888 copper amine oxidase, putative similar to
amine oxidase [copper-containing] precursor [Pisum
sativum] SWISS-PROT:Q43077
Length = 741
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 402 DTTDSDDKCPIWLPRERS-SCHDCVLVWLV*FHHVP 298
D + DD +W R R D V+ + V FHHVP
Sbjct: 659 DRSQGDDTLAVWSQRNRKIEKTDIVMWYTVGFHHVP 694
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R L+YC +L++IPSS
Sbjct: 584 LPDLSNATNLERLELSYCKSLVEIPSS 610
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R L+YC +L++IPSS
Sbjct: 640 LPDLSNATNLERMDLSYCESLVEIPSS 666
>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
copper amine oxidase [Cicer arietinum]
gi|3819099|emb|CAA08855
Length = 566
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 387 DDKCPIWLPRERSSCHDCVLVW-LV*FHHVP 298
DD +W R+R + ++VW + FHH+P
Sbjct: 487 DDTLAVWSDRDRDIENKDIVVWYTLGFHHIP 517
>At4g12280.1 68417.m01946 copper amine oxidase family protein
contains Pfam domain, PF01179: Copper amine oxidase,
enzyme domain
Length = 300
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 387 DDKCPIWLPRERSSCHDCVLVW-LV*FHHVP 298
DD +W R+R + ++VW + FHH+P
Sbjct: 221 DDTLAVWSDRDRDIENKDIVVWYTLGFHHIP 251
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 325 LASLISSRSLMRYSLTYCSALLKIPSS 245
L L ++ +L R S+ CS+L+K+PSS
Sbjct: 713 LPDLSTATNLQRLSIERCSSLVKLPSS 739
>At5g28320.1 68418.m03438 expressed protein This is likely a
pseudogene.
Length = 967
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 136 KLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRG 267
KLPA+ + L +RK E T+ + ++R+ A +++ S +G
Sbjct: 219 KLPAIGRAVLVYRKSNEVECTELEKEMMRRKMKAWEERDMSEKG 262
>At2g28010.1 68415.m03394 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 396
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 342 GNYYVPGEAKLGICHPNPWYQPSFT 416
G +V E +G H N W++PSF+
Sbjct: 153 GEPFVMPETIIGCGHNNSWFKPSFS 177
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 166 KHRKXREALRTKRLQVTLKRRSSAIKKKRESSR 264
++ K +EAL T RLQV + ++A+ ++RE++R
Sbjct: 936 EYAKQQEALETMRLQV--EEANAAVIREREAAR 966
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 175 KXREALRTKRLQVTLKRRSSAIKKKRESSRGLN 273
K +EA R K ++TLK +++ KR SRGLN
Sbjct: 353 KKQEARRVKE-RMTLKHKNTGQWAKRMLSRGLN 384
>At4g17970.1 68417.m02675 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 560
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 124 EDSKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRN 303
E K L + +S HR + + L V L+ +SAIK + + G N N +N
Sbjct: 336 EVCKALTELADSISNHRHCSPEILSDHLHVALQDLNSAIKSQPKLFLGSNLHRHNNKHQN 395
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,188,547
Number of Sequences: 28952
Number of extensions: 109894
Number of successful extensions: 438
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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