Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0694
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37020.1 68415.m04540 translin family protein similar to SP|Q...    61   6e-10
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    30   1.6  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    27   8.7  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    27   8.7  
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein...    27   8.7  
At2g43470.1 68415.m05402 expressed protein                             27   8.7  

>At2g37020.1 68415.m04540 translin family protein similar to
           SP|Q62348 Translin {Mus musculus}; contains Pfam profile
           PF01997: Translin family
          Length = 238

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 290 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSPVE 463
           Y RL + +   P  Y++Y   WR  TQ     +A   WLE G L  H    E LG++ +E
Sbjct: 78  YGRLAEILEECPGQYYRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEKLGLNSLE 137

Query: 464 LKEGFHLDIEDYLIGY*RCAQNCLVWXXXXXXXXXXXXXXXXXXXXWNXNAGFRLLNLKN 643
               F L+ EDYL G    + +   +                     + +A FR+LNL+N
Sbjct: 138 ----FGLETEDYLTGICFMSNDLPRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRN 193

Query: 644 DHLRKRF 664
           D LRK+F
Sbjct: 194 DFLRKKF 200



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 90  INKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIH 221
           + K F  F+  L++   LRE IR +  E++  +R     L ++H
Sbjct: 12  LEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQANLLLVH 55


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 100 YSVTSKRISTKNKNYARRFGLYVKRLTKFLGKRPQCSK*YTTMKPALLRHVASSSTFREG 279
           Y    K IS   +     F  +   L +F+   P C +   + K A+ RH  +++T    
Sbjct: 197 YRKEKKSISEVYEEVTMLFKGHEDLLMEFVNFLPNCPESAPSTKNAVPRHKGTATTAMHS 256

Query: 280 PRWIRKTERCCTTNRLLQVSGSLEIHDP--TLLLSDSAHYMAREGNPGFTRDH 432
            +  ++ +RC    +L   SG  +  +     L++ SA     EG PG+ RD+
Sbjct: 257 DK--KRKQRC----KLEDYSGHSDQREDGDENLVTCSADSPVGEGQPGYFRDY 303


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 121 ISTKNKNYARRFGLYVKRLTKFLGKRPQCSK*YTTMKPALLRHVAS 258
           I T  +   +RFGL+   LT  L    Q    +   +P LLR  +S
Sbjct: 340 IGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSS 385


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 241 LRHVASS--STFREGPRWIRKTERCCTTNRLLQVSGSLEIHDPTLLLSDSAHYMAREGN 411
           LRHV +S  +  ++ P+W +     C  NRL+ +  SL++      L  S +  A+  N
Sbjct: 150 LRHVFASRIAEIKDSPQWNKLAFISCACNRLVLMDESLQLLPAVESLDLSRNKFAKVDN 208


>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 282

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 60  KHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTV 206
           K VK C NEL  ++ S    N   E++   T+ +  +++DQ S +   +
Sbjct: 142 KRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQPSHDEENI 190


>At2g43470.1 68415.m05402 expressed protein
          Length = 498

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 54  LIKHVKMCDNELI-NKIFSDFQKNLDQEQELRETIRTICKE 173
           L+ H K   N++  N  F +   NLD  +++RE I+++ KE
Sbjct: 131 LLNHNKQWFNQIYANLTFLNLTDNLDLFRKIRENIKSLLKE 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,178
Number of Sequences: 28952
Number of extensions: 271405
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)