Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0691
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        72   3e-13
SB_33215| Best HMM Match : HECT (HMM E-Value=0)                        41   7e-04
SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)                29   2.9  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  27   8.9  

>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 30/44 (68%), Positives = 41/44 (93%)
 Frame = +3

Query: 15   PLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALLANEKLPPLES 146
            P+ ++RVKV+F+DE GEGSGVARSFYT+++EALL+ EKLPPL++
Sbjct: 1545 PMTIHRVKVSFKDEQGEGSGVARSFYTALSEALLSGEKLPPLDT 1588



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 433  LTHHQAQLGERLYPRVHSLHPTFA 504
            L +H+  LGERLYPRVH+L P  A
Sbjct: 1645 LPYHRQSLGERLYPRVHALKPALA 1668


>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1128

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   SAQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALLANEKLPP 137
           S   P   +  +  F  E G G GV R F+ +VA AL ++EK+PP
Sbjct: 767 SEMQPFHYSNFRAKFEGEEGSGPGVNRGFFAAVANALKSDEKVPP 811


>SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)
          Length = 888

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 188 CSISTAICAIVASCGFKGRQFFICK*SLCYTSVEGSCDAASFTGFISERNLDAIYSQW 15
           C+  +  C+I A+C      F  C  +  YT    +C A   +  I+ R LD  Y QW
Sbjct: 725 CTDGSHTCSINAACTNTVGSF-TCACNAGYTGNGHTCQAKYISISITSRGLDDPYFQW 781


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 250  QECAFKGSNASCGRPSRAAPC 312
            Q+C F G +  C +P +A PC
Sbjct: 1252 QKCCFNGCHKDCVKPGKADPC 1272


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  FRDEPGEGSGVARSFYTSVAEALLANEKLPPLE 143
           +R  P E  G   +F  S  + L AN+KLP ++
Sbjct: 410 YRLHPPENRGSLANFILSAIDELSANDKLPAIQ 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,350
Number of Sequences: 59808
Number of extensions: 200529
Number of successful extensions: 489
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)